drawFeaturePlot: Draw Feature Plot

In fpestana-git/visualisR: Graphic visualization for transcriptomics data

Draw Feature Plot

Description

Function that generates feature plots for given features

Usage

drawFeaturePlot(
  seuratObject,
  featureValues,
  datasetName,
  reductionValue = "umap",
  widthValue = 7,
  heightValue = 7,
  pointSizeValue = 0.3,
  nrowValue = 1,
  ncolValue = 1
)

Arguments

seuratObject	seurat data object
featureValues	name of the features
datasetName	name of dataset to use on the saved objects
reductionValue	which dimensionality reduction method to use (default umap)
widthValue	width of the final plot (default 7 cm)
heightValue	height of the final plot (default 7 cm)
pointSizeValue	size of the points (default 0.3)
nrowValue	number of rows (default 1 for only one feature)
ncolValue	number of colums (default 1 for only one feature)

Examples

drawFeaturePlot(seuratObject = seuratLOG,feature = c("S100A9","NKG7","LDHB","CD79A"),nrowValue = 2,ncolValue = 2,datasetName = "test")

fpestana-git/visualisR documentation built on May 2, 2022, 11:58 a.m.