drawHeatmapPlot: Draw Heatmap Plot

In fpestana-git/visualisR: Graphic visualization for transcriptomics data

Draw Heatmap Plot

Description

Function that generates heamap plots for given features

Usage

drawHeatmapPlot(
  seuratObject,
  featureNames,
  labelValue = TRUE,
  widthValue = 28,
  heightValue = 15,
  plotName,
  assaytype = "SCT",
  groupValue = "orig.ident",
  slotValue = "scale.data",
  drawLinesValue = TRUE,
  cellsValue = NULL,
  groupColorValues = NULL,
  showLegend = FALSE
)

Arguments

seuratObject	seurat data object
featureNames	list of features to plot
labelValue	show or not the labels above the groups (default TRUE)
widthValue	width of the final plot (default 28 cm)
heightValue	height of the final plot (default 15 cm)
plotName	name of the plot
assaytype	TEST
groupValue	TEST
slotValue	TEST
drawLinesValue	whether to show the lines separating the groups (default = TRUE)
cellsValue	TEST
groupColorValues	list of colors for the groups (default = NULL)
showLegend	show or hide plot legend (default FALSE)
datasetName	name of the dataset (e.g., Pestana2022)

Examples

drawHeatmapPlot(seuratObject = myseuratobject,featureNames =  c("Snap25","Slc17a7","Tbr1"),plotName = "neurons")

fpestana-git/visualisR documentation built on May 2, 2022, 11:58 a.m.