drawSpatialDimPlot: Draw Spatial Plot
In fpestana-git/visualisR: Graphic visualization for transcriptomics data

View source: R/drawSpatialDimPlot.R

drawSpatialDimPlot

R Documentation

Draw Spatial Plot

Description

Function that generates spatial dim plots for a given Seurat dataset

Usage

drawSpatialDimPlot(
  spatialObject,
  groupValue,
  recursiveSection = TRUE,
  sectionID = NULL
)

Arguments

`spatialObject`	spatial Seurat object to use
`groupValue`	metadata variable to show on the plot
`recursiveSection`	if plots should be made for all sections (default TRUE)
`sectionID`	if recursiveSection is FALSE, then a specific section ID should be defined (default NULL)

Value

This function generates and saves a spatial Dim plot in the Results folder and prints in the screen.

Examples

drawSpatialDimPlot(spatialObject = spatial,groupValue = "normCTXDistance_Bin5",recursiveSection = TRUE )
drawSpatialDimPlot(spatialObject = spatial,groupValue = "normCTXDistance_Bin5",recursiveSection = FALSE,sectionID = "B1_A1" )

fpestana-git/visualisR documentation built on May 2, 2022, 11:58 a.m.