API for franapoli/gep2pep
Creation and Analysis of Pathway Expression Profiles (PEPs)

Global functions
CategorizedCollection Man page Source code
CategorizedCollection-class Man page
CondSEA Man page Source code
PathSEA Man page Source code
as.CategorizedCollection Man page Source code
attachInfo Source code
buildGene2SetIndex Source code
buildPEPs Man page Source code
checkGEPsFormat Source code
checkRepository Man page Source code
checkSets Source code
clearCache Man page Source code
convertFromGSetClass Source code
createMergedRepository Man page Source code
createRepository Man page Source code
doPSEA Source code
dummyFunction Source code
exportCollectionsInfo Source code
exportSEA Man page Source code
format.object_size Source code
gene2pathways Man page Source code
gep2pep Man page Source code
gep2pep-package Man page
getCollections Man page Source code
getDetails Man page Source code
getPEPRanks Source code
getPEPs Source code
getResults Man page Source code
get_repo_prjname Source code
gsea Source code
importFromRawMode Man page Source code
importMSigDB.xml Man page Source code
ks.sign Source code
ks.test.2 Source code
loadCollection Man page Source code Source code
loadESmatrix Man page Source code
loadPEPs Source code
loadPVmatrix Man page Source code
loadPerts Source code
loadSampleGEP Man page Source code
loadSamplePWS Man page Source code
makeCollectionIDs Man page Source code Source code
mergePEPs Source code
openRepository Man page Source code
pwList2pwStruct Source code
rankPEPsByCols.ES Source code
rankPEPsByCols.NES Source code
rankPEPsByCols.SPV Source code
rankPEPsByRows.ES Source code
say Source code
setId2setName Man page Source code
storeCachedRanks Source code
storePEPs Source code
franapoli/gep2pep documentation built on May 16, 2018, 8:33 p.m.