Creation and Analysis of Pathway Expression Profiles (PEPs)

Global functions | |
---|---|

CategorizedCollection | Man page Source code |

CategorizedCollection-class | Man page |

CondSEA | Man page Source code |

PathSEA | Man page Source code |

as.CategorizedCollection | Man page Source code |

attachInfo | Source code |

buildGene2SetIndex | Source code |

buildPEPs | Man page Source code |

checkGEPsFormat | Source code |

checkRepository | Man page Source code |

checkSets | Source code |

clearCache | Man page Source code |

convertFromGSetClass | Source code |

createMergedRepository | Man page Source code |

createRepository | Man page Source code |

doPSEA | Source code |

dummyFunction | Source code |

exportCollectionsInfo | Source code |

exportSEA | Man page Source code |

format.object_size | Source code |

gene2pathways | Man page Source code |

gep2pep | Man page Source code |

gep2pep-package | Man page |

getCollections | Man page Source code |

getDetails | Man page Source code |

getPEPRanks | Source code |

getPEPs | Source code |

getResults | Man page Source code |

get_repo_prjname | Source code |

gsea | Source code |

importFromRawMode | Man page Source code |

importMSigDB.xml | Man page Source code |

ks.sign | Source code |

ks.test.2 | Source code |

loadCollection | Man page Source code Source code |

loadESmatrix | Man page Source code |

loadPEPs | Source code |

loadPVmatrix | Man page Source code |

loadPerts | Source code |

loadSampleGEP | Man page Source code |

loadSamplePWS | Man page Source code |

makeCollectionIDs | Man page Source code Source code |

mergePEPs | Source code |

openRepository | Man page Source code |

pwList2pwStruct | Source code |

rankPEPsByCols.ES | Source code |

rankPEPsByCols.NES | Source code |

rankPEPsByCols.SPV | Source code |

rankPEPsByRows.ES | Source code |

say | Source code |

setId2setName | Man page Source code |

storeCachedRanks | Source code |

storePEPs | Source code |

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