exportSEA: Export CondSEA or PathSEA results to XLS format

In franapoli/gep2pep: Creation and Analysis of Pathway Expression Profiles (PEPs)

Description

The XLS output includes the full CondSEA or PathSEA results, together with additional gene set information for the CondSEA. If the PathSEA or CondSEA analysis was performed with details=TRUE, details will be reported in the XLS file. This function requires the WriteXLS library.

Usage

exportSEA(rp, results, outname = NULL)

Arguments

rp	A repository created by createRepository.
results	The output of CondSEA or PathSEA.
outname	Name of the XLS file to be created.

Value

Nothing.

See Also

CondSEA, PathSEA

Examples

db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

pgset <- c("(+)_chelidonine", "(+/_)_catechin")
psea <- CondSEA(rp, pgset)

## Not run: 
exportSEA(rp, psea)

## End(Not run)

unlink(repo_path, TRUE)

franapoli/gep2pep documentation built on May 30, 2019, 4:34 p.m.