makeCollectionIDs: Creates a collection label for each pathway.
In franapoli/gep2pep: Creation and Analysis of Pathway Expression Profiles (PEPs)
Description
Usage
Arguments
Value
See Also
Examples
Description
Given a database, uses "category" and "subcategory" entries to
create a vector of collection identifiers. Useful to extract a
collection from a database.
Usage
1
makeCollectionIDs(sets)
Arguments
sets
A pathway database in the same format as output by
importMSigDB.xml.
Value
A vector of identifiers, one per pathway, with the format:
"category_subcategory".
See Also
importMSigDB.xml
Examples
1
2
3
4
5
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7
8
9
10
db <- loadSamplePWS()
ids <- makeCollectionIDs(db)
unique(ids)
## [1] "c3_TFT" "c3_MIR" "c4_CGN"
db <- db[ids=="c3_MIR"]
length(db)
## [1] 10
franapoli/gep2pep documentation built on May 30, 2019, 4:34 p.m.
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Description Usage Arguments Value See Also Examples
Description
Given a database, uses "category" and "subcategory" entries to create a vector of collection identifiers. Useful to extract a collection from a database.
Usage
1 | makeCollectionIDs(sets)
|
Arguments
sets |
A pathway database in the same format as output by
|
Value
A vector of identifiers, one per pathway, with the format: "category_subcategory".
See Also
importMSigDB.xml
Examples
1 2 3 4 5 6 7 8 9 10 | db <- loadSamplePWS()
ids <- makeCollectionIDs(db)
unique(ids)
## [1] "c3_TFT" "c3_MIR" "c4_CGN"
db <- db[ids=="c3_MIR"]
length(db)
## [1] 10
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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