getResults: Extracts the results matrix from 'CondSEA' or 'PathSEA'...

In franapoli/gep2pep: Creation and Analysis of Pathway Expression Profiles (PEPs)

Description

Extracts the results matrix from CondSEA or PathSEA output

Usage

getResults(analysis, collection)

Arguments

analysis	The output of either CondSEA or PathSEA.
collection	One of the names returned by getCollections.

Value

A 2-columns matrix including ESs and p-values (see details) for each pathway database and condition.

See Also

CondSEA, PathSEA

Examples

db <- loadSamplePWS()
repo_path <- file.path(tempdir(), "gep2pepTemp")

rp <- createRepository(repo_path, db)
geps <- loadSampleGEP()
buildPEPs(rp, geps)

pgset <- c("(+)_chelidonine", "(+/_)_catechin")
psea <- CondSEA(rp, pgset)

getResults(psea, "c3_TFT")

unlink(repo_path, TRUE)

franapoli/gep2pep documentation built on May 30, 2019, 4:34 p.m.