basicAnno: Basic gene annotation

Description Usage Arguments Details Value Author(s)

View source: R/HLP_basic_gene_annotation.R

Description

Annotate gene symbols and EntrezIDs using an organism-specific annotation package.

Usage

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basicAnno(data, Symbol.column = "SYMBOL", Entrez.column = "ENTREZID",
  org = "human")

Arguments

data

dataframe or character with filepath to data to be loaded.

Symbol.column

character with column name of Gene Symbols in data. if NULL, SYMBOLs are derived from Entrez.column using the annotation package for org.

Entrez.column

character with column name of ENTREZ IDs in data. if NULL, ENTREZ IDs are derived from Symbol.column using the annotation package for org. Either Symbol.column or Entrez.column must be specified.

org

character with species name ("human", "mouse", "rat").

Details

This function adds annotation of either gene symbol or EntrezID to data using the corresponding annotation package of the organism specified in org.

Value

dataframe with added annotation column.

Author(s)

Frank Ruehle


frankRuehle/systemsbio documentation built on July 3, 2018, 10:05 a.m.