calculate_moderated_ttest: Moderated t-test for proteomics
In frhl/genoppi-package: Genoppi

Description Usage Arguments Author(s) See Also

View source: R/calculate_moderated_ttest.R

Calculate the moderated ttest using limma package.

calculate_moderated_ttest(input_file, normalize = "median")

calculate_moderated_ttest_hgnc(input_file)

calculate_moderated_ttest_uniprot(input_file)

`input_file`	a data.frame containing at least three columns, gene, replicate 1 and replicate 2. Triplicates and so on can be also be included. The function assumes that the first column contains gene information.
`normalize`	should replicate columns be normalized? Default is 'median', NULL indicates no normalization.

April/Frederik

Other statistics: normalize(), scatter

frhl/genoppi-package documentation built on Jan. 25, 2020, 4:37 p.m.