Files in frhl/genoppi-package

Genoppi

.DS_Store

.Rbuildignore

.gitignore

DESCRIPTION

NAMESPACE

R/.DS_Store

R/addNames.R R/assignFamily_inc_doubles.R R/calculate_moderated_ttest.R R/channels_extract.R R/compare_two_files.R R/ggstamp.R R/impute.R R/logFC.R R/makePlotFamilies_1quadrant.R R/misc.R R/normalize.R R/plot_scatter.R R/plot_volcano.R R/search_scatter.R R/search_volcano.R R/seperate_to_groups_for.R R/sp_layer_for_inweb.R R/sp_layer_for_snp_to_gene.R R/sp_layer_for_uploaded_genes.R R/theme_genoppi.R R/vp_layer_for_inweb.R R/vp_layer_for_snp_to_gene.R R/vp_layer_for_uploaded_genes.R README.md

data/.DS_Store

data/HGNC_gene_to_UniProt_accession_number_Genoppi_ready.csv

data/HUGO_gene_fam.RData

data/InWeb3_interactions.txt

data/InWeb3_interactions_highconf.txt

data/InWeb_combined_Oct2018.RData

data/UniProt-ID_gene_mapping_Apr142016.csv

data/colors.txt

data/colors_markers.txt

data/constrained_cleaned_exac_with_pHI_Aug26.txt

data/ensembl_homo_sapiens_genes.txt

data/header.txt

data/hugo_families.csv

data/hugo_gene_family_names.txt

data/inweb_pooled.txt

data/protFams_genes_cols.txt

data/proteinfam_loc_May2019.RData

data/snp_to_gene.RData

genoppi.Rproj

man/calculate_moderated_ttest.Rd man/compare_two_files.Rd man/data.Rd man/ggstamp.Rd man/grapes-nin-grapes.Rd man/grapes-not-in-grapes.Rd man/impute_gaussian.Rd man/logFC.Rd man/makePlotFamilies_1quadrant.Rd man/misc.Rd man/normalize.Rd man/null.omit.Rd man/parsing_addNames.Rd man/plot_scatter.Rd man/plot_volcano.Rd man/search_scatter.Rd man/search_volcano.Rd man/separate_to_groups_for_color.Rd man/sp_layer_for_inweb.Rd man/sp_layer_for_snp_to_gene_sgl.Rd man/sp_layer_for_uploaded_genes.Rd man/theme_genoppi.Rd man/vp_layer_for_inweb.Rd man/vp_layer_for_snp_to_gene_sgl.Rd man/vp_layer_for_uploaded_genes_gg.Rd man/warn.Rd

tests/.DS_Store

tests/testthat/.DS_Store

tests/testthat/data/.DS_Store

tests/testthat/data/14martin_FLT1_proteins.csv

tests/testthat/data/ms1.rds

tests/testthat/functions/testpaths.R

tests/testthat/reference/.DS_Store

tests/testthat/reference/calculate_moderated_ttest/calculate_moderated_ttest.A1.rds

tests/testthat/reference/calculate_moderated_ttest/calculate_moderated_ttest.A2.rds

tests/testthat/reference/calculate_moderated_ttest/calculate_moderated_ttest.B1.rds

tests/testthat/reference/calculate_moderated_ttest/calculate_moderated_ttest.B2.rds

tests/testthat/reference/calculate_moderated_ttest/calculate_moderated_ttest.C1.rds

tests/testthat/reference/calculate_moderated_ttest/calculate_moderated_ttest.C2.rds

tests/testthat/reference/describe/describe.A1.rds

tests/testthat/reference/describe/describe.A2.rds

tests/testthat/reference/prepare/.DS_Store

tests/testthat/reference/prepare/SMC_FLT1.NoImp.GenoppiInput.txt

tests/testthat/reference/prepare/prepare.A1.rds

tests/testthat/reference/prepare/prepare.C2.rds

tests/testthat/test.calculate_moderated_ttest.R tests/testthat/test.describe.R tests/testthat/test.impute.R tests/testthat/test.interactors.R tests/testthat/test.logFC.R tests/testthat/test.normalize.R tests/testthat/test.plotOverlap.R tests/testthat/test.plotVolcano.R tests/testthat/test.plot_volcano.R tests/testthat/test.prepare.R

tests/testthat/test.shiny_orig_pulldown.R

tests/testthat/test.workflow.R

frhl/genoppi-package documentation built on Jan. 25, 2020, 4:37 p.m.