plot_volcano: Volcano plots for proteomics

In frhl/genoppi-package: Genoppi

Description

Will generate a classic volcano plot. plot_volcano is intented for use in R, whereas the remaining functons are used in the shiny application or intented for the user that requires additional control of plotting.

Usage

plot_volcano(d, bait = NULL, main = NULL, sub = NULL)

plot_volcano_qc_gg(d)

plot_volcano_qc_gg_1(data, data1, col, col1, logfc1, logfc2, pval)

plot_volcano_exac_gg(b, a, n)

plot_volcano_qc(d)

plot_volcano_user_color(n_exist, y_exist)

plot_volcano_multiple_cond(d)

plot_volcano_multiple_cond_for_goi(d)

plot_volcano_exac(b, a, n)

plot_volcano_exac_multi(b, a, n)

Author(s)

April/Frederik

Examples

## Not run: 
# artificial data to illustrate how to use.
data <- data.frame(gene=LETTERS, rep1 = runif(1:26), rep2=rnorm(1:26))
result = calculate_moderated_ttest(data)
plot_volcano(result, bait = 'A', main = 'randomly generated data points')

## End(Not run)

frhl/genoppi-package documentation built on Jan. 25, 2020, 4:37 p.m.