ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline

Analyze label-free proteomics datasets from various sources (MaxQuant, Spectronaut, etc) using a pipeline that facilitates peptide filtering and many algorithms for normalization and statistical analysis. A comprehensive PDF report can be generated that includes many data visualizations and documentation thereof.

Getting started

Package details

Maintainer
LicenseGPL-3 + file LICENSE
Version1.2.2
URL https://github.com/ftwkoopmans/msdap
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("ftwkoopmans/msdap")
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.