export_protein_abundance_matrix: Rollup and export to protein-level TSV table, applied to all...
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
View source: R/export_data_tables.R
export_protein_abundance_matrix R Documentation
Rollup and export to protein-level TSV table, applied to all peptide-level intensity data
Description
generated a protein-level abundance matrix for each column in dataset$peptides that starts with "intensity"
Usage
export_protein_abundance_matrix(dataset, rollup_algorithm, output_dir)
Arguments
dataset
your dataset
rollup_algorithm
strategy for combining peptides to proteins. For valid options, see rollup_pep2prot()
output_dir
output directory where all output files are stored, must be an existing directory
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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View source: R/export_data_tables.R
| export_protein_abundance_matrix | R Documentation |
Rollup and export to protein-level TSV table, applied to all peptide-level intensity data
Description
generated a protein-level abundance matrix for each column in dataset$peptides that starts with "intensity"
Usage
export_protein_abundance_matrix(dataset, rollup_algorithm, output_dir)
Arguments
dataset |
your dataset |
rollup_algorithm |
strategy for combining peptides to proteins. For valid options, see rollup_pep2prot() |
output_dir |
output directory where all output files are stored, must be an existing directory |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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