dea_results_to_wide: convert the results from differential expression analysis...
In ftwkoopmans/msdap: Mass Spectrometry Downstream Analysis Pipeline
dea_results_to_wide R Documentation
convert the results from differential expression analysis from a long-format tibble to wide-format
Description
DEA statistics table dataset$de_proteins presented in wide format;
protein_id, accessions, fasta_headers, gene_symbols_or_id
<dea_algorithm x contrast>foldchange.log2, <dea_algorithm x contrast>pvalue, <dea_algorithm x contrast>qvalue (pvalue adjusted for multiple testing), etc.
Usage
dea_results_to_wide(dataset)
Arguments
dataset
your dataset. if 'de_proteins' is lacking, result is empty tibble
Details
if there are 2 or more different DEA algorithms in the results, add a column that combines their results such that all proteins significant in 2 or more tests/algorithms are flagged
ftwkoopmans/msdap documentation built on March 5, 2025, 12:15 a.m.
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| dea_results_to_wide | R Documentation |
convert the results from differential expression analysis from a long-format tibble to wide-format
Description
DEA statistics table dataset$de_proteins presented in wide format;
protein_id, accessions, fasta_headers, gene_symbols_or_id
<dea_algorithm x contrast>foldchange.log2, <dea_algorithm x contrast>pvalue, <dea_algorithm x contrast>qvalue (pvalue adjusted for multiple testing), etc.
Usage
dea_results_to_wide(dataset)
Arguments
dataset |
your dataset. if 'de_proteins' is lacking, result is empty tibble |
Details
if there are 2 or more different DEA algorithms in the results, add a column that combines their results such that all proteins significant in 2 or more tests/algorithms are flagged
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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