Clustering functions and analysis pipeline for methylation outcome data based on clustering and GEEs

Acluster | A-clustering |

Aclust-package | Aclust package implements the A-clustering algorithm and... |

annot | Annotation for the probes on chromosome 7 in the Illumina... |

annot.clusters | Annotate vectors of Illumina probe names, each vector... |

annot.probe.vec | Annotate vector of Illumina probe names |

assign.to.clusters | cluster a set of probes |

betas.7 | Methylation data (beta values) from chromosome 7. |

calc.dist.clusters | INTERNAL |

calc.dist.clust.point | INTERNAL |

calc.dist.d.neighbor | INTERNAL |

create.annot.triche | Create an annotation to a vector of probes |

Dbp.merge | Dbp-merge |

expit | expit |

first | The first entry in a vector |

GEE.clusters | Performs GEE analysis of exposure effect on clusters of CpG... |

last | The last entry in a vector |

load.annotation | Load annotation table |

logit | logit |

order.betas.by.chrom.location | Organizes a matrix of methylation values to be ordered by... |

organize.island.repeated | INTERNAL |

plot.cor.clusts | Plots clusters on a heatmap ofa correlation matrix |

print.clusters.gee.summary | INTERNAL |

print.site.analysis | INTERNAL |

summarize.top.clusters | Summarize the top clusters |

update.clust.indicator | INTERNAL |

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.