Description Usage Arguments Value Examples
Returns a matrix with annotations of the CpG sites represented by a given vector of probe names
1 | annot.probe.vec(probe.vec, annot = NULL, annotation.file.name = NULL, required.annotation = c("IlmnID", "Coordinate_37", "UCSC_RefGene_Name", "UCSC_RefGene_Group", "UCSC_CpG_Islands_Name", "Relation_to_UCSC_CpG_Island"))
|
probe.vec |
A vector of Illumina probe names |
annot |
A preloaded data.table of annotation |
annotation.file.name |
If annot it not given, annotation.file.name can be provide the file name of the illumine annotation file and the function will load it and convert it to a data.table. If neither annot or annotation.file.name are provided, annotation will be loaded from a Tim Triche's bioconductor R package. |
required.annotation |
Names of columns from Illumina annotation file, to be provided as annotation |
A matrix of requred.annotations for each of the probes in probe.vec
1 2 3 |
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