Description Usage Arguments Value
Merge all sites on an interval, if the sites at the ends of the interval are “close" to each other
1 | Dbp.merge(ordr.vec, thresh.dist, bp.thresh.dist, location.vec, dist.type = "spearman")
|
ordr.vec |
An (n by m) matrix of n measurements of m random variables (methylations). The columns are ordered. |
thresh.dist |
A similarity distance threshold. Sites in the interval are merged to a single cluster if the similarity distance between them is above thresh.dist. |
bp.thresh.dist |
A threshold distance in (e.g.) chromosomal location. Any interval to be potentially merged is smaller or equal to bp.thresh.dist. |
location.vec |
An m vector specifying the locations (e.g. chromosomal locations) of the variables measured in the matrix ordr.vec. |
dist.type |
Type of similarity distance function "spearman", "person" or "euclid". |
An m vector of cluster assignments of the m ordered variables.
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