API for fursham-h/factR
Functional Annotation of Custom Transcriptomes
| Global functions | |
|---|---|
| .checkObjects | Source code |
| .checkinputs | Source code |
| .extractCDSchecks | Source code |
| .getCDS | Source code |
| .getSequence | Source code |
| .getdomains | Source code |
| .matchfunction1 | Source code |
| .matchfunction2 | Source code |
| .matchfunction3 | Source code |
| .matchgeneinfochecks | Source code |
| .pairq2r | Source code |
| .postmatching | Source code |
| .prepTotest | Source code |
| .runDomainSearch | Source code |
| .runbuildCDS | Source code |
| .subsetTranscripts | Source code |
| .testNMD | Source code |
| buildCDS | Man page Source code |
| chrom_matched_query_gtf | Man page |
| domains.known | Man page |
| domains.out | Man page |
| filtereach | Man page Source code |
| has_consistentSeqlevels | Man page Source code |
| importFASTA | Man page Source code |
| importGTF | Man page Source code |
| is_gtf | Source code |
| matchChromosomes | Man page Source code |
| matchGeneInfo | Man page Source code |
| matched_query_gtf | Man page |
| mutateeach | Man page Source code |
| new_query_gtf | Man page |
| predictDomains | Man page Source code |
| predictNMD | Man page Source code |
| query_cds | Man page |
| query_exons | Man page |
| query_gtf | Man page |
| ref_cds | Man page |
| ref_exons | Man page |
| ref_gtf | Man page |
| sorteach | Man page Source code |
| subsetNewTranscripts | Man page Source code |
| trimTranscripts | Man page Source code |
| viewTranscripts | Man page Source code |
