importFASTA: Import FASTA file into R
In fursham-h/factR: Functional Annotation of Custom Transcriptomes
importFASTA R Documentation
Import FASTA file into R
Description
This function is a wrapper to Biostrings::readDNAStringSet()
function to import FASTA genome sequence file and simultaneously
convert long chromosome names
(e.g. 1 dna:chromosome chromosome:GRCm38:1:1:195471971:1 REF)
to short names (e.g. 1)
Usage
importFASTA(con)
Arguments
con
Path to FASTA file
Value
Imported DNAStringSet object
Author(s)
Fursham Hamid
fursham-h/factR documentation built on Aug. 20, 2023, 1:58 p.m.
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| importFASTA | R Documentation |
Import FASTA file into R
Description
This function is a wrapper to Biostrings::readDNAStringSet() function to import FASTA genome sequence file and simultaneously convert long chromosome names (e.g. 1 dna:chromosome chromosome:GRCm38:1:1:195471971:1 REF) to short names (e.g. 1)
Usage
importFASTA(con)
Arguments
con |
Path to FASTA file |
Value
Imported DNAStringSet object
Author(s)
Fursham Hamid
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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