query_gtf: Imported GTF file containing 4 transcript entries of the same...
In fursham-h/factR: Functional Annotation of Custom Transcriptomes
query_gtf R Documentation
Imported GTF file containing 4 transcript entries of the same gene
Description
A dataset containing coordinates of transcript and exons from 4 transcripts
of mouse Ptbp1. Transcript names and gene IDs have been modified to
demonstrate de novo origin of GTF
Usage
data(query_gtf)
Format
A GRanges object with 56 ranges and 3 metadata columns:
- ranges
Chromosome, start, end, and strand info of 4 transcripts
and its exons
- type
Entry type; transcript or exon
- transcript_id
Name or ID given to transcripts
- gene_id
Name or ID given to gene origin of transcripts
...
Source
fursham-h/factR documentation built on Aug. 20, 2023, 1:58 p.m.
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| query_gtf | R Documentation |
Imported GTF file containing 4 transcript entries of the same gene
Description
A dataset containing coordinates of transcript and exons from 4 transcripts of mouse Ptbp1. Transcript names and gene IDs have been modified to demonstrate de novo origin of GTF
Usage
data(query_gtf)
Format
A GRanges object with 56 ranges and 3 metadata columns:
- ranges
Chromosome, start, end, and strand info of 4 transcripts and its exons
- type
Entry type; transcript or exon
- transcript_id
Name or ID given to transcripts
- gene_id
Name or ID given to gene origin of transcripts
...
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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