autoplot.anosim: ggplot-based plot for objects of class '"anosim"'

In gavinsimpson/ggvegan: 'ggplot2' Plots for the 'vegan' Package

ggplot-based plot for objects of class "anosim"

Description

Produces a multi-layer ggplot object representing the output of objects produced by anosim.

Usage

## S3 method for class 'anosim'
autoplot(
  object,
  notch = TRUE,
  varwidth = TRUE,
  xlab = NULL,
  ylab = NULL,
  title = "Analysis of similarities",
  subtitle = NULL,
  caption = bquote(R == .(R) * "," ~ P == .(P)),
  ...
)

Arguments

object	an object of class "anosim", the result of a call to anosim.
notch	logical; make notched (default) or standard box plot?
varwidth	logical; make box width proportional to the square-root of the number of observations in the group (default)?
xlab	character; label for the x-axis.
ylab	character; label for the y-axis.
title	character; title for the plot.
subtitle	character; subtitle for the plot.
caption	character; caption for the plot.
...	additional arguments passed to other methods.

Value

A ggplot object.

Author(s)

Didzis Elferts. Modifications by Gavin L. Simpson.

Examples

data(dune)
data(dune.env)
dune.dist <- vegdist(dune)
dune.ano <- with(dune.env, anosim(dune.dist, Management))

autoplot(dune.ano, notch = FALSE)

gavinsimpson/ggvegan documentation built on July 28, 2023, 9:24 a.m.