autoplot.poolaccum: ggplot-based plot for objects of class '"poolaccum"'

In gavinsimpson/ggvegan: 'ggplot2' Plots for the 'vegan' Package

ggplot-based plot for objects of class "poolaccum"

Description

Produces a multi-layer ggplot object representing the output of objects produced by poolaccum.

Usage

## S3 method for class 'poolaccum'
autoplot(
  object,
  facet = TRUE,
  ribbon = facet,
  ncol = NULL,
  ribbon.alpha = 0.3,
  xlab = "Size",
  ylab = "Richness",
  title = "Accumulated species richness",
  subtitle = NULL,
  caption = NULL,
  ...
)

Arguments

object	an object of class "poolaccum", the result of a call to poolaccum.
facet	logical; should extrapolated richness estimators be shown in separate facets?
ribbon	logical; show the quantile-based uncertainty interval? Uses geom_ribbon for plot.
ncol	numeric; if facetting the plot, how many columns to use. Default arguuments will result in three columns.
ribbon.alpha	numeric; alpha transparency used for the uncertainty interval. Passed to the alpha aesthetic of ggplot2::geom_ribbon().
xlab	character; label for the x axis.
ylab	character; label for the y axis.
title	character; title for the plot.
subtitle	character; subtitle for the plot.
caption	character; caption for the plot.
...	additional arguments passed to fortify.poolaccum().

Value

A ggplot object.

Author(s)

Didzis Elferts & Gavin L. Simpson

Examples

data(BCI)
pool <- poolaccum(BCI)

autoplot(pool)

## Turn off facetting; turns off ribbon too
autoplot(pool, facet = FALSE)

gavinsimpson/ggvegan documentation built on July 28, 2023, 9:24 a.m.