Files in gavinsimpson/gratia
Graceful 'ggplot'-Based Graphics and Other Functions for GAMs Fitted Using 'mgcv'
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.github/workflows/readme-renderer.yaml
.github/workflows/test-coverage.yaml
.gitignore
.lintr
CITATION.cff
CODE_OF_CONDUCT.md
DESCRIPTION
LICENSE
LICENSE.md
Makefile
NAMESPACE
NEWS.md
R/add-methods.R
R/basis-funs.R
R/basis-size.R
R/by-variable-utilities.R
R/compare-smooths.R
R/concurvity.R
R/confint-methods.R
R/data-sim.R
R/data-slice.R
R/datagen-methods.R
R/datasets.R
R/derivatives.R
R/diagnose.R
R/difference-smooths.R
R/distribution-helpers.R
R/draw-evaluate-smooth.R
R/draw-gam.R
R/draw-methods.R
R/draw-utilities.R
R/edf.R
R/effects.R
R/evaluate_smooth.R
R/evenly.R
R/family-utils.R
R/fderiv.R
R/fitted_values.R
R/gjrm-methods.R
R/gratia-package.R
R/lp-matrix.R
R/nested-functions.R
R/other-scam-methods.R
R/overview.R
R/parametric-effects.R
R/penalty.R
R/posterior-samples.R
R/residuals.R
R/rootogram.R
R/samplers.R
R/simulate-methods.R
R/smooth-coefs.R
R/smooth-data.R
R/smooth-estimates.R
R/smooth-type.R
R/subsetting.R
R/too_far.R
R/utililties.R
R/variance-components.R
README.Rmd
README.md
data/bird_move.rda
data/gss_vocab.rda
data/ref_sims.rda
data/smallAges.rda
data/zooplankton.rda
inst/CITATION
man/add_confint.Rd
man/add_constant.Rd
man/add_fitted.Rd
man/add_fitted.gam.Rd
man/add_fitted_samples.Rd
man/add_partial_residuals.Rd
man/add_residuals.Rd
man/add_residuals.gam.Rd
man/add_sizer.Rd
man/appraise.Rd
man/basis.Rd
man/basis_size.Rd
man/bird_move.Rd
man/boundary.Rd
man/check_user_select_smooths.Rd
man/coef.scam.Rd
man/compare_smooths.Rd
man/confint.fderiv.Rd
man/confint.gam.Rd
man/data_combos.Rd
man/data_sim.Rd
man/data_slice.Rd
man/datagen.Rd
man/derivative_samples.Rd
man/derivatives.Rd
man/difference_smooths.Rd
man/draw.Rd
man/draw.basis.Rd
man/draw.compare_smooths.Rd
man/draw.derivatives.Rd
man/draw.difference_smooth.Rd
man/draw.evaluated_parametric_term.Rd
man/draw.gam.Rd
man/draw.gamlss.Rd
man/draw.mgcv_smooth.Rd
man/draw.pairwise_concurvity.Rd
man/draw.parametric_effects.Rd
man/draw.penalty_df.Rd
man/draw.rootogram.Rd
man/draw.smooth_estimates.Rd
man/draw.smooth_samples.Rd
man/draw_parametric_effect.Rd
man/edf.Rd
man/eval_smooth.Rd
man/evaluate_parametric_term.Rd
man/evaluate_smooth.Rd
man/evenly.Rd
man/factor_combos.Rd
man/family.gam.Rd
man/family_name.Rd
man/family_type.Rd
man/fderiv.Rd
man/figures/README-appraise-figure-1.png
man/figures/README-draw-gam-figure-1.png
man/figures/README-draw-gam-figure-2d-1.png
man/figures/lifecycle-archived.svg
man/figures/lifecycle-defunct.svg
man/figures/lifecycle-deprecated.svg
man/figures/lifecycle-experimental.svg
man/figures/lifecycle-maturing.svg
man/figures/lifecycle-questioning.svg
man/figures/lifecycle-soft-deprecated.svg
man/figures/lifecycle-stable.svg
man/figures/lifecycle-superseded.svg
man/fitted_samples.Rd
man/fitted_values.Rd
man/fix_offset.Rd
man/fixef.Rd
man/fixef.gam.Rd
man/gaussian_draws.Rd
man/get_by_smooth.Rd
man/get_smooth.Rd
man/get_smooths_by_id.Rd
man/gratia-package.Rd
man/gss_vocab.Rd
man/gw_functions.Rd
man/has_theta.Rd
man/is_by_smooth.Rd
man/is_factor_term.Rd
man/is_mgcv_smooth.Rd
man/is_offset.Rd
man/link.Rd
man/load_mgcv.Rd
man/lp_matrix.Rd
man/lss_parameters.Rd
man/mh_draws.Rd
man/model_concurvity.Rd
man/model_constant.Rd
man/model_vars.Rd
man/n_smooths.Rd
man/nb_theta.Rd
man/nested_partial_residuals.Rd
man/nested_rug_values.Rd
man/null_deviance.Rd
man/observed_fitted_plot.Rd
man/overview.Rd
man/parametric_effects.Rd
man/parametric_terms.Rd
man/partial_derivatives.Rd
man/partial_residuals.Rd
man/penalty.Rd
man/post_draws.Rd
man/post_link_funs.Rd
man/posterior_samples.Rd
man/predicted_samples.Rd
man/qq_plot.Rd
man/ref_level.Rd
man/ref_sims.Rd
man/reorder_fs_smooth_terms.Rd
man/reorder_tensor_smooth_terms.Rd
man/rep_first_factor_value.Rd
man/residuals_hist_plot.Rd
man/residuals_linpred_plot.Rd
man/response_derivatives.Rd
man/rootogram.Rd
man/seq_min_max_eps.Rd
man/shift_values.Rd
man/simulate.Rd
man/smallAges.Rd
man/smooth_coef_indices.Rd
man/smooth_coefs.Rd
man/smooth_data.Rd
man/smooth_dim.Rd
man/smooth_estimates.Rd
man/smooth_label.Rd
man/smooth_samples.Rd
man/smooth_terms.Rd
man/smooth_type.Rd
man/smooths.Rd
man/spline_values.Rd
man/spline_values2.Rd
man/term_names.Rd
man/term_variables.Rd
man/theta.Rd
man/tidy_basis.Rd
man/to_na.Rd
man/too_far.Rd
man/too_far_to_na.Rd
man/transform_fun.Rd
man/typical_values.Rd
man/user_draws.Rd
man/variance_comp.Rd
man/vars_from_label.Rd
man/which_smooths.Rd
man/worm_plot.Rd
man/zooplankton.Rd
pkgdown/_pkgdown.yml
pkgdown/extra.css
pkgdown/extra.scss
tests/Examples/gratia-Ex.Rout.save
tests/test-all.R
tests/testthat/_snaps/add-functions.md
tests/testthat/_snaps/backward/response-derivatives.md
tests/testthat/_snaps/bam-ar/draw-bam-ar-1-factor-by.svg
tests/testthat/_snaps/bam-ar/draw-bam-ar-1-single-series.svg
tests/testthat/_snaps/basis/draw-basis-works-with-a-bivariate-te-contour.svg
tests/testthat/_snaps/basis/draw-basis-works-with-a-bivariate-te.svg
tests/testthat/_snaps/basis/draw-basis-works-with-a-bivariate-tprs-contour.svg
tests/testthat/_snaps/basis/draw-basis-works-with-a-bivariate-tprs.svg
tests/testthat/_snaps/basis/draw-basis-works-with-a-gam-multiple-smooths.svg
tests/testthat/_snaps/basis/draw-basis-works-with-a-gam-single-smooth.svg
tests/testthat/_snaps/by-variables/continuous-by-variable-smmoth-fixed-scales.svg
tests/testthat/_snaps/by-variables/continuous-by-variable-smmoth.svg
tests/testthat/_snaps/by-variables/draw-gam-user-select-and-parametric-true.svg
tests/testthat/_snaps/central/response-derivatives.md
tests/testthat/_snaps/compare-smooths/compare-smooths-all-smooths.svg
tests/testthat/_snaps/compare-smooths/compare-smooths-bottom-legend.svg
tests/testthat/_snaps/compare-smooths/compare-smooths-set-nrow-ncol.svg
tests/testthat/_snaps/concurvity/draw-concurvity-overall.svg
tests/testthat/_snaps/concurvity/draw-concurvity-pairwise.svg
tests/testthat/_snaps/confint-methods.md
tests/testthat/_snaps/data-sim.md
tests/testthat/_snaps/data-slice.md
tests/testthat/_snaps/datagen.md
tests/testthat/_snaps/derivatives/draw-issue-47-derivatives-for-complex-factor-by.svg
tests/testthat/_snaps/derivatives/draw-issue-47-derivatives-for-factor-by.svg
tests/testthat/_snaps/derivatives/draw-issue-47-derivatives-for-gamm-factor-by.svg
tests/testthat/_snaps/derivatives/draw-issue-47-derivs-for-ordered-factor-by.svg
tests/testthat/_snaps/derivatives/draw-issue-57-derivatives-for-factor-by.svg
tests/testthat/_snaps/diagnostic-plots/appraise-diagnostic-plots.svg
tests/testthat/_snaps/diagnostic-plots/appraise-lm.svg
tests/testthat/_snaps/diagnostic-plots/appraise-worm-plot.svg
tests/testthat/_snaps/diagnostic-plots/qq-plot-glm-normal.svg
tests/testthat/_snaps/diagnostic-plots/qq-plot-glm-simulate.svg
tests/testthat/_snaps/diagnostic-plots/qq-plot-glm-uniform.svg
tests/testthat/_snaps/diagnostic-plots/qq-plot-lm-normal.svg
tests/testthat/_snaps/diagnostic-plots/qq-plot-lm-simulate.svg
tests/testthat/_snaps/diagnostic-plots/qq-plot-lm-uniform.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-gam-normal.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-gam-simulate.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-gam-uniform.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-glm-normal.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-glm-simulate.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-glm-uniform.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-lm-normal.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-lm-simulate.svg
tests/testthat/_snaps/diagnostic-plots/worm-plot-lm-uniform.svg
tests/testthat/_snaps/difference-smooths.md
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-bam.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-bivariate-gam-contours.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-bivariate-gam.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-fixed-scales.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-inc-grp-means.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-ref-line.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam-user-data.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gam.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gamm.svg
tests/testthat/_snaps/difference-smooths/draw-difference-smooths-gamm4.svg
tests/testthat/_snaps/draw-gam/draw-gam-dlnm-m.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-1-smooth-constant-fun.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-1-smooth-constant.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-1-smooth-fun.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-1-smooth-hotpink-residuals.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-1-smooth-rotated.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-1-smooth.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-2-fac-parametric.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-2-fac.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-ar1-by.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-ar1.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-bam.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gam-constant-fun.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gam-constant.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gam-fun.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gam-rotated.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gam.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gamgcv.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gamm.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gamm4.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-gaulss.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-para-sm-parametric.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-para-sm.svg
tests/testthat/_snaps/draw-gam/draw-gam-m-scat.svg
tests/testthat/_snaps/draw-gam/draw-gam-parametric-only-model-rotated-labels.svg
tests/testthat/_snaps/draw-gam/draw-gam-quadvar-te.svg
tests/testthat/_snaps/draw-gam/draw-gam-rm1.svg
tests/testthat/_snaps/draw-gam/draw-gam-rm2.svg
tests/testthat/_snaps/draw-gam/draw-gam-trivar-te.svg
tests/testthat/_snaps/draw-gam/draw-gam-univariate-t2-smooth.svg
tests/testthat/_snaps/draw-gam/draw-gam-univariate-te-smooth.svg
tests/testthat/_snaps/draw-gam/draw-gam-univariate-ti-smooth.svg
tests/testthat/_snaps/draw-gam/grouped-by-gam.svg
tests/testthat/_snaps/draw-gam/ordered-grouped-by-gam.svg
tests/testthat/_snaps/draw-methods/draw-2d-smooth-with-spectral-palette.svg
tests/testthat/_snaps/draw-methods/draw-am-with-2d-smooth.svg
tests/testthat/_snaps/draw-methods/draw-am-with-factor-by-variable-smooth.svg
tests/testthat/_snaps/draw-methods/draw-basic-tprs-basis-rotated.svg
tests/testthat/_snaps/draw-methods/draw-basic-tprs-basis.svg
tests/testthat/_snaps/draw-methods/draw-by-factor-basis.svg
tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-rotated-labels.svg
tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-default-change.svg
tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-fixed-scales-rotated.svg
tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam-with-sizer-change.svg
tests/testthat/_snaps/draw-methods/draw-derivatives-for-a-gam.svg
tests/testthat/_snaps/draw-methods/draw-factor-by-variable-smooth-with-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-fs-smooth-with-discrete-plasma-palette.svg
tests/testthat/_snaps/draw-methods/draw-gam-model-with-fs-smooth.svg
tests/testthat/_snaps/draw-methods/draw-gam-model-with-non-standard-names.svg
tests/testthat/_snaps/draw-methods/draw-gam-model-with-ranef-smooth-factor-by.svg
tests/testthat/_snaps/draw-methods/draw-gam-model-with-ranef-smooth.svg
tests/testthat/_snaps/draw-methods/draw-gam-smooth-for-selected-smooth-character.svg
tests/testthat/_snaps/draw-methods/draw-gam-smooth-for-selected-smooth-logical.svg
tests/testthat/_snaps/draw-methods/draw-gam-smooth-for-selected-smooth-numeric.svg
tests/testthat/_snaps/draw-methods/draw-gam-smooth-for-two-selected-smooths-character.svg
tests/testthat/_snaps/draw-methods/draw-gam-smooth-for-two-selected-smooths-logical.svg
tests/testthat/_snaps/draw-methods/draw-gam-smooth-for-two-selected-smooths-numeric.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-factor-parametric-term.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-linear-parametric-term.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-overall-uncertainty-false.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-partial-match-true.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-select-and-parametric-is-false.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-select-and-parametric-is-null.svg
tests/testthat/_snaps/draw-methods/draw-gam-with-select-and-parametric-is-true.svg
tests/testthat/_snaps/draw-methods/draw-gam-without-select-and-parametric-is-false.svg
tests/testthat/_snaps/draw-methods/draw-gam-without-select-and-parametric-is-true.svg
tests/testthat/_snaps/draw-methods/draw-issue-39-empty-plots.svg
tests/testthat/_snaps/draw-methods/draw-model-with-fs-smooth-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-model-with-ranef-smooth-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-partial-derivatives-for-a-gam-with-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-partial-derivatives-for-a-gam.svg
tests/testthat/_snaps/draw-methods/draw-partial-derivatives-for-gam-fixed-scales-rotated.svg
tests/testthat/_snaps/draw-methods/draw-partial-derivatives-for-gam-rotated-labels.svg
tests/testthat/_snaps/draw-methods/draw-selected-factor-by-smooth-samples-for-gam-m3.svg
tests/testthat/_snaps/draw-methods/draw-selected-smooth-samples-for-gam-m3.svg
tests/testthat/_snaps/draw-methods/draw-simple-multi-smooth-am-with-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-simple-multi-smooth-am.svg
tests/testthat/_snaps/draw-methods/draw-simple-partial-residuals-with-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-simple-partial-residuals.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-bivariate-gam-contours.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m1-rotated.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m1.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m2-rotated.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m2.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m3-fixed-scales-rotated.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m3-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m3-rotated.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-m3.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-gam-n-samples.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-m1-n-samples.svg
tests/testthat/_snaps/draw-methods/draw-smooth-samples-for-m2-n-samples.svg
tests/testthat/_snaps/draw-methods/draw-with-continuous-by-var-fixed-scale.svg
tests/testthat/_snaps/draw-methods/draw-with-continuous-by-variable-smooth.svg
tests/testthat/_snaps/draw-methods/draw-with-linear-parametric-term.svg
tests/testthat/_snaps/draw-methods/draw-with-ranef-smooth-factor-by-fixed-scales.svg
tests/testthat/_snaps/draw-methods/draw-works-for-sos-smooths.svg
tests/testthat/_snaps/draw-methods/draw-ziplss-parametric-terms-issue-45.svg
tests/testthat/_snaps/draw-methods/issue-22-draw-with-mixed-random-effects.svg
tests/testthat/_snaps/draw-methods/issue-73-draw-uses-fixed-scales-if-asked-for-them.svg
tests/testthat/_snaps/draw-parametric-effects/draw-parametric-effects-m-2-fac-with-term.svg
tests/testthat/_snaps/draw-parametric-effects/draw-parametric-effects-m-2-fac.svg
tests/testthat/_snaps/draw-parametric-effects/draw-parametric-effects-m-only-para.svg
tests/testthat/_snaps/draw-parametric-effects/draw-parametric-effects-m-para-sm-with-term.svg
tests/testthat/_snaps/draw-parametric-effects/draw-parametric-effects-m-para-sm.svg
tests/testthat/_snaps/draw-parametric-effects/issue-219-parametric-effects.svg
tests/testthat/_snaps/draw-parametric-effects/ziplss-with-both-parametric-not-plotted.svg
tests/testthat/_snaps/draw-parametric-effects/ziplss-with-both-parametric-plotted.svg
tests/testthat/_snaps/draw-parametric-effects/ziplss-with-factor-para-not-plotted.svg
tests/testthat/_snaps/draw-parametric-effects/ziplss-with-factor-para-plotted.svg
tests/testthat/_snaps/draw-parametric-effects/ziplss-with-numeric-para-not-plotted.svg
tests/testthat/_snaps/draw-parametric-effects/ziplss-with-numeric-para-plotted.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-gam-for-su-m-quadvar-t22.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-gam-for-su-m-quadvar-te2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-gam-for-su-m-trivar-t22.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-gam-for-su-m-trivar-te2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-gam-sos-chlorophyll-with-crs.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-gam-sos-chlorophyll.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-sm-est-grouped-by-true-ordered.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-sm-est-grouped-by-true.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-est-works-with-change-indicators.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-est-works-with-sizer-indicators.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-1-smooth.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-bam.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-gam.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-gamgcv.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-gamm.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-gamm4.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-gaulss.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-m-scat.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-bivar-t2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-bivar-te.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-bivar.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-quadvar-t2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-quadvar-t22.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-quadvar-te.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-quadvar-te2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-quadvar.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-trivar-t2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-trivar-t22.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-trivar-te.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-trivar-te2.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-su-m-trivar.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-sz-factor-smooth.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-sz-two-factor-smooth.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-univariate-t2-smooth.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-univariate-te-smooth.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-smooth-estimates-univariate-ti-smooth.svg
tests/testthat/_snaps/draw-smooth-estimates/draw-subtitle-ordered-by-smooths.svg
tests/testthat/_snaps/edf.md
tests/testthat/_snaps/fderiv.md
tests/testthat/_snaps/fitted/posterior-samples.md
tests/testthat/_snaps/forward/response-derivatives.md
tests/testthat/_snaps/gjrm-methods/draw-simple-gjrm-gamlss.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-bird-move-model-1.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-bird-move-model-2.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-bird-move-model-3.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-bird-move-model-4.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-bird-move-model-5.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-co2-model-1.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-co2-model-2.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-co2-model-3.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-co2-model-4.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-co2-model-5.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-zoop-model-4.svg
tests/testthat/_snaps/hgam-paper/hgam-paper-zoop-model-5.svg
tests/testthat/_snaps/lp-matrix.md
tests/testthat/_snaps/m_1_smooth/posterior-samples.md
tests/testthat/_snaps/m_nb-backward-order-2/posterior-samples.md
tests/testthat/_snaps/m_nb-backward/posterior-samples.md
tests/testthat/_snaps/m_nb-central-order-2/posterior-samples.md
tests/testthat/_snaps/m_nb-central/posterior-samples.md
tests/testthat/_snaps/m_nb-forward-order-2/posterior-samples.md
tests/testthat/_snaps/m_nb-forward/posterior-samples.md
tests/testthat/_snaps/overview.md
tests/testthat/_snaps/parametric-effects/testing-issue-212.svg
tests/testthat/_snaps/penalty/draw-penalty-df-as-matrix-false.svg
tests/testthat/_snaps/penalty/draw-penalty-df-as-matrix-true.svg
tests/testthat/_snaps/penalty/draw-penalty-df-issue-95-label-order.svg
tests/testthat/_snaps/penalty/draw-penalty-df-with-multiple-smooths-normalized.svg
tests/testthat/_snaps/penalty/draw-penalty-df-with-multiple-smooths.svg
tests/testthat/_snaps/penalty/draw-penalty-df-with-single-smooths-normalized.svg
tests/testthat/_snaps/penalty/draw-penalty-df-with-single-smooths.svg
tests/testthat/_snaps/penalty/draw-penalty-multiple-smooths-user-continuous-fill.svg
tests/testthat/_snaps/penalty/draw-penalty-single-smooths-user-continuous-fill.svg
tests/testthat/_snaps/posterior-samples.md
tests/testthat/_snaps/posterior/posterior-samples.md
tests/testthat/_snaps/qq-plot/qq-plot-data-simulation-pearson-residuals.svg
tests/testthat/_snaps/qq-plot/qq-plot-data-simulation-response-residuals.svg
tests/testthat/_snaps/qq-plot/qq-plot-data-simulation.svg
tests/testthat/_snaps/qq-plot/qq-plot-normality-assumption-pearson-residuals.svg
tests/testthat/_snaps/qq-plot/qq-plot-normality-assumption-response-residuals.svg
tests/testthat/_snaps/qq-plot/qq-plot-normality-assumption.svg
tests/testthat/_snaps/qq-plot/qq-plot-uniform-randomisation-pearson-residuals.svg
tests/testthat/_snaps/qq-plot/qq-plot-uniform-randomisation-response-residuals.svg
tests/testthat/_snaps/qq-plot/qq-plot-uniform-randomisation.svg
tests/testthat/_snaps/rootograms/draw-gaussian-rootogram.svg
tests/testthat/_snaps/rootograms/draw-neg-bin-rootogram.svg
tests/testthat/_snaps/rootograms/draw-neg-bin-sqrt-rootogram.svg
tests/testthat/_snaps/rootograms/draw-neg-bin-standing-rootogram.svg
tests/testthat/_snaps/rootograms/draw-neg-bin-suspended-rootogram.svg
tests/testthat/_snaps/rootograms/draw-poisson-rootogram.svg
tests/testthat/_snaps/smooth-coefs.md
tests/testthat/_snaps/soap-films.md
tests/testthat/_snaps/soap-films/draw-gam-so-soap-film.svg
tests/testthat/_snaps/soap-films/draw-smooth-estimates-so-soap-film.svg
tests/testthat/_snaps/variance-components.md
tests/testthat/_snaps/worm-plot/worm-plot-data-simulation-pearson-residuals.svg
tests/testthat/_snaps/worm-plot/worm-plot-data-simulation-response-residuals.svg
tests/testthat/_snaps/worm-plot/worm-plot-data-simulation.svg
tests/testthat/_snaps/worm-plot/worm-plot-normality-assumption-pearson-residuals.svg
tests/testthat/_snaps/worm-plot/worm-plot-normality-assumption-response-residuals.svg
tests/testthat/_snaps/worm-plot/worm-plot-normality-assumption.svg
tests/testthat/_snaps/worm-plot/worm-plot-uniform-randomisation-pearson-residuals.svg
tests/testthat/_snaps/worm-plot/worm-plot-uniform-randomisation-response-residuals.svg
tests/testthat/_snaps/worm-plot/worm-plot-uniform-randomisation.svg
tests/testthat/setup.R
tests/testthat/test-add-functions.R
tests/testthat/test-bam-ar.R
tests/testthat/test-basis-size.R
tests/testthat/test-basis.R
tests/testthat/test-by-variables.R
tests/testthat/test-compare-smooths.R
tests/testthat/test-concurvity.R
tests/testthat/test-confint-methods.R
tests/testthat/test-data-sim.R
tests/testthat/test-data-slice.R
tests/testthat/test-datagen.R
tests/testthat/test-derivatives.R
tests/testthat/test-diagnostic-plots.R
tests/testthat/test-difference-smooths.R
tests/testthat/test-distribution-helpers.R
tests/testthat/test-draw-gam.R
tests/testthat/test-draw-methods.R
tests/testthat/test-draw-parametric-effects.R
tests/testthat/test-draw-smooth-estimates.R
tests/testthat/test-edf.R
tests/testthat/test-effects.R
tests/testthat/test-evaluate-parametric-terms.R
tests/testthat/test-evenly.R
tests/testthat/test-family-utils.R
tests/testthat/test-fderiv.R
tests/testthat/test-fitted-values.R
tests/testthat/test-gfam.R
tests/testthat/test-gjrm-methods.R
tests/testthat/test-hgam-paper.R
tests/testthat/test-lp-matrix.R
tests/testthat/test-overview.R
tests/testthat/test-parametric-effects.R
tests/testthat/test-partial-derivatives.R
tests/testthat/test-penalty.R
tests/testthat/test-posterior-samples.R
tests/testthat/test-qq-plot.R
tests/testthat/test-residuals.R
tests/testthat/test-response-derivatives.R
tests/testthat/test-rootograms.R
tests/testthat/test-samplers.R
tests/testthat/test-scam-methods.R
tests/testthat/test-simulate-methods.R
tests/testthat/test-smooth-coefs.R
tests/testthat/test-smooth-estimates.R
tests/testthat/test-smooth-type.R
tests/testthat/test-soap-films.R
tests/testthat/test-subsetting.R
tests/testthat/test-utilities.R
tests/testthat/test-variance-components.R
tests/testthat/test-worm-plot.R
vignettes/custom-plotting.Rmd
vignettes/data-slices.Rmd
vignettes/gratia.Rmd
vignettes/methods-in-ecology-and-evolution.csl
vignettes/posterior-simulation.Rmd
vignettes/references.bib
