Description Usage Arguments Value Examples
Function to get raw cDNA (CDS) from Ensembl REST API
1 2 3 | getVEPFromHGVS(hgvsTag, transcriptID, idIncludedInTag = F,
args = "canonical=1", includeOnlyCanonicalTranscript = F,
outputDataFrame = F, verbose = F)
|
hgvsTag |
Character string with mutation HGVS Code |
idIncludedInTag |
Does hgvsTag have form ENSTxxx:c.156T>A or just the hgvs code? |
args |
Extra args to pass to VEP API request. |
includeOnlyCanonicalTranscript |
Only output canonical transcript data. default to FALSE |
outputDataFrame |
Flag to indicate whether data frame or list is output. Defaults to FALSE |
verbose |
Output verbose data for debugging |
tag |
Character string with ENST tag to get sequence for |
Request from VEP API
1 | seq <- getVEPFromHGVS('c.1559delT','ENST00000343536')
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