Description Usage Arguments Value Examples
Helper function to split CSQ annotation in Exac's INFO field
1 | splitCSQAnnotation(csqString)
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csqString |
Raw CSQ string as read from INFO field |
Data frame with each column being a field on CSQ. If annotation has multiple values (e.g. due to multi-allelic), each allele is a separate row
1 | csqAnnot<- splitCSQAnnotation('C|ENSG00000223972|ENST00000456328|Transcript|non_coding_transcript_exon_variant&non_coding_transcript_variant|620||||||1||1|DDX11L1|HGNC|37102|processed_transcript|YES||||||||3/3|||ENST00000456328.2:n.620G>C|||||||||||||||||||,C|ENSG00000223972|ENST00000450305|Transcript|splice_region_variant&non_coding_transcript_exon_variant&non_coding_transcript_variant|412||||||1||1|DDX11L1|HGNC|37102|transcribed_unprocessed_pseudogene|||||||||5/6|||ENST00000450305.2:n.412G>C|||||||||||||||||||')
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