createCDNASequences: createCDNASequences
In gdelangel/genomicRTools: Genomic R Tools
Description
Usage
Arguments
Value
Examples
Description
Given an HGVS mutation code, produce corresponding cDNA and amino-acid sequence,
starting from the ATG initiator codon and up to STOP codon.
Usage
1
createCDNASequences(mutationList, transcriptID, lowerCaseChange = F)
Arguments
mutationList
Character string vector with HGVS mutation codes to produce
transcriptID
Character string with ENST ID to which hgvs code corresponds
lowerCaseChange
Boolean - Highlight change in lowercase
Value
Data frame with fields cdna and aa representing new cDNA and amino acid mutated sequence
Examples
1
str <- createCDNASequences(c('c.571G>C','c.1559delT'),'ENST00000374840')
gdelangel/genomicRTools documentation built on May 16, 2019, 11:14 p.m.
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Description Usage Arguments Value Examples
Description
Given an HGVS mutation code, produce corresponding cDNA and amino-acid sequence, starting from the ATG initiator codon and up to STOP codon.
Usage
1 | createCDNASequences(mutationList, transcriptID, lowerCaseChange = F)
|
Arguments
mutationList |
Character string vector with HGVS mutation codes to produce |
transcriptID |
Character string with ENST ID to which hgvs code corresponds |
lowerCaseChange |
Boolean - Highlight change in lowercase |
Value
Data frame with fields cdna and aa representing new cDNA and amino acid mutated sequence
Examples
1 | str <- createCDNASequences(c('c.571G>C','c.1559delT'),'ENST00000374840')
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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