| CAGEr |
Man page
|
| CAGEr-package |
Man page
|
| CAGEset |
Man page
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| CAGEset-class |
Man page
|
| CTSSclusteringMethod |
Man page
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| CTSSclusteringMethod,CAGEset-method |
Man page
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| CTSScoordinates |
Man page
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| CTSScoordinates,CAGEset-method |
Man page
|
| CTSSnormalizedTpm |
Man page
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| CTSSnormalizedTpm,CAGEset-method |
Man page
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| CTSStagCount |
Man page
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| CTSStagCount,CAGEset-method |
Man page
|
| FANTOM5humanSamples |
Man page
|
| FANTOM5mouseSamples |
Man page
|
| aggregateTagClusters |
Man page
|
| aggregateTagClusters,CAGEset-method |
Man page
|
| clusterCTSS |
Man page
|
| clusterCTSS,CAGEset-method |
Man page
|
| coerce,data.frame,CAGEset-method |
Man page
|
| consensusClusters |
Man page
|
| consensusClusters,CAGEset-method |
Man page
|
| consensusClustersTpm |
Man page
|
| consensusClustersTpm,CAGEset-method |
Man page
|
| cumulativeCTSSdistribution |
Man page
|
| cumulativeCTSSdistribution,CAGEset-method |
Man page
|
| exampleCAGEset |
Man page
|
| exportCTSStoBedGraph |
Man page
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| exportCTSStoBedGraph,CAGEset-method |
Man page
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| exportToBed |
Man page
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| exportToBed,CAGEset-method |
Man page
|
| expressionClasses |
Man page
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| expressionClasses,CAGEset-method |
Man page
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| extractExpressionClass |
Man page
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| extractExpressionClass,CAGEset-method |
Man page
|
| genomeName |
Man page
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| genomeName,CAGEset-method |
Man page
|
| getCTSS |
Man page
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| getCTSS,CAGEset-method |
Man page
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| getExpressionProfiles |
Man page
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| getExpressionProfiles,CAGEset-method |
Man page
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| getShiftingPromoters |
Man page
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| getShiftingPromoters,CAGEset-method |
Man page
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| importPublicData |
Man page
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| importPublicData,character,character,ANY,character-method |
Man page
|
| inputFiles |
Man page
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| inputFiles,CAGEset-method |
Man page
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| inputFilesType |
Man page
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| inputFilesType,CAGEset-method |
Man page
|
| librarySizes |
Man page
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| librarySizes,CAGEset-method |
Man page
|
| mergeCAGEsets |
Man page
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| mergeCAGEsets,CAGEset,CAGEset-method |
Man page
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| mergeSamples |
Man page
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| mergeSamples,CAGEset,numeric-method |
Man page
|
| normalizeTagCount |
Man page
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| normalizeTagCount,CAGEset-method |
Man page
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| plotCorrelation |
Man page
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| plotCorrelation,CAGEset-method |
Man page
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| plotExpressionProfiles |
Man page
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| plotExpressionProfiles,CAGEset-method |
Man page
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| plotInterquantileWidth |
Man page
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| plotInterquantileWidth,CAGEset-method |
Man page
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| plotReverseCumulatives |
Man page
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| plotReverseCumulatives,CAGEset-method |
Man page
|
| quantilePositions |
Man page
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| quantilePositions,CAGEset-method |
Man page
|
| sampleLabels |
Man page
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| sampleLabels,CAGEset-method |
Man page
|
| scoreShift |
Man page
|
| scoreShift,CAGEset,character,character-method |
Man page
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| setColors |
Man page
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| setColors,CAGEset-method |
Man page
|
| show,CAGEset-method |
Man page
|
| show-methods |
Man page
|
| tagClusters |
Man page
|
| tagClusters,CAGEset-method |
Man page
|
