CTSScoordinates: Extracting genomic coordinates of TSSs from CAGEset object
In ge11232002/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Extracts the genomic coordinates of all detected TSSs from a CAGEset object.
Usage
1
CTSScoordinates(object)
Arguments
object
A CAGEset object
Value
Returns a data.frame with genomic coordinates of all TSSs. pos column contains 1-based coordinate of the TSS.
Author(s)
Vanja Haberle
See Also
CTSStagCount
CTSSnormalizedTpm
Examples
1
2
3
4
load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))
CTSS <- CTSScoordinates(exampleCAGEset)
head(CTSS)
ge11232002/CAGEr documentation built on May 17, 2019, 12:13 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) See Also Examples
Description
Extracts the genomic coordinates of all detected TSSs from a CAGEset object.
Usage
1 | CTSScoordinates(object)
|
Arguments
object |
A |
Value
Returns a data.frame with genomic coordinates of all TSSs. pos column contains 1-based coordinate of the TSS.
Author(s)
Vanja Haberle
See Also
CTSStagCount
CTSSnormalizedTpm
Examples
1 2 3 4 | load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))
CTSS <- CTSScoordinates(exampleCAGEset)
head(CTSS)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.