expressionClasses: Extracting labels of expression classes

In ge11232002/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Description

Retrieves labels of expression classes of either individual CTSSs or consensus clusters from a CAGEset object.

Usage

expressionClasses(object, what)

Arguments

object	A CAGEset object
what	Which level of expression clustering should be used. Can be either "CTSS" to extract labels of expression classes of individual CTSSs or "consensusClusters" to extract labels of expression classes of consensus clusters.

Value

Returns character vector of labels of expression classes. The number of labels matches the number of expression clusters returned by getExpressionProfiles function.

Author(s)

Vanja Haberle

See Also

getExpressionProfiles
plotExpressionProfiles
extractExpressionClass

Examples

load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))

exprClasses <- expressionClasses(exampleCAGEset, what = "CTSS")
exprClasses

ge11232002/CAGEr documentation built on May 17, 2019, 12:13 a.m.