CTSStagCount: Extracting CAGE tag count for TSSs from CAGEset object
In ge11232002/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
Description
Extracts the tag count for all detected TSSs in all CAGE datasets from a CAGEset object.
Usage
1
CTSStagCount(object)
Arguments
object
A CAGEset object
Value
Returns a data.frame with number of CAGE tags supporting each TSS (rows) in every CAGE dataset (columns).
Author(s)
Vanja Haberle
See Also
CTSScoordinates
CTSSnormalizedTpm
Examples
1
2
3
4
load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))
tagCount <- CTSStagCount(exampleCAGEset)
head(tagCount)
ge11232002/CAGEr documentation built on May 17, 2019, 12:13 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
Description
Extracts the tag count for all detected TSSs in all CAGE datasets from a CAGEset object.
Usage
1 | CTSStagCount(object)
|
Arguments
object |
A |
Value
Returns a data.frame with number of CAGE tags supporting each TSS (rows) in every CAGE dataset (columns).
Author(s)
Vanja Haberle
See Also
CTSScoordinates
CTSSnormalizedTpm
Examples
1 2 3 4 | load(system.file("data", "exampleCAGEset.RData", package="CAGEr"))
tagCount <- CTSStagCount(exampleCAGEset)
head(tagCount)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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