IUPAC2Matrix: IUPAC2Matrix
In ge11232002/TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis
IUPAC2Matrix R Documentation
IUPAC2Matrix
Description
Convert a IUPAC string into a Postion Weight Matirx
Usage
IUPAC2Matrix(x)
Arguments
x
The IUPAC string.
Details
The mapping between IUPAC Extended Genetic Alphabet and the DNA bases letters
are from IUPAC_CODE_MAP in Biostrings package.
Value
A matrix with position weight.
Author(s)
Ge Tan
Examples
x <- "RMGNV"
IUPAC2Matrix(x)
ge11232002/TFBSTools documentation built on Dec. 26, 2024, 12:38 a.m.
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| IUPAC2Matrix | R Documentation |
IUPAC2Matrix
Description
Convert a IUPAC string into a Postion Weight Matirx
Usage
IUPAC2Matrix(x)
Arguments
x |
The IUPAC string. |
Details
The mapping between IUPAC Extended Genetic Alphabet and the DNA bases letters
are from IUPAC_CODE_MAP in Biostrings package.
Value
A matrix with position weight.
Author(s)
Ge Tan
Examples
x <- "RMGNV"
IUPAC2Matrix(x)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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