makeFlatFileDir: Generate "FlatFileDir" directory
In ge11232002/TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis
makeFlatFileDir R Documentation
Generate "FlatFileDir" directory
Description
On JASPAR web service, "FlatFileDir" includes all the *.pfm and a
matrix_list.txt file
Usage
makeFlatFileDir(JASPAR)
Arguments
JASPAR
A JASPAR object. Now it can be JASPAR2014 or JASPAR2016.
Details
The matrix_list.txt file contains each pfm per line.
Each line has the ID, total information content, name, class and tags of
one pfm.
Value
The generated files are under "FlatFileDir" directory.
Author(s)
Ge Tan
Examples
library(JASPAR2014)
makeFlatFileDir(JASPAR2014)
unlink("FlatFileDir", recursive = TRUE)
ge11232002/TFBSTools documentation built on Dec. 26, 2024, 12:38 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| makeFlatFileDir | R Documentation |
Generate "FlatFileDir" directory
Description
On JASPAR web service, "FlatFileDir" includes all the *.pfm and a matrix_list.txt file
Usage
makeFlatFileDir(JASPAR)
Arguments
JASPAR |
A JASPAR object. Now it can be JASPAR2014 or JASPAR2016. |
Details
The matrix_list.txt file contains each pfm per line. Each line has the ID, total information content, name, class and tags of one pfm.
Value
The generated files are under "FlatFileDir" directory.
Author(s)
Ge Tan
Examples
library(JASPAR2014)
makeFlatFileDir(JASPAR2014)
unlink("FlatFileDir", recursive = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.