Description Usage Arguments Value Examples
The functions to initialize, store matrix or delete matrix in JASPAR database.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 | ## S4 method for signature 'character'
deleteMatrixHavingID(x, IDs)
## S4 method for signature 'SQLiteConnection'
deleteMatrixHavingID(x, IDs)
## S4 method for signature 'JASPAR2014'
deleteMatrixHavingID(x, IDs)
## S4 method for signature 'character,PFMatrixList'
storeMatrix(x, pfmList)
## S4 method for signature 'SQLiteConnection,PFMatrixList'
storeMatrix(x, pfmList)
## S4 method for signature 'JASPAR2014,PFMatrixList'
storeMatrix(x, pfmList)
## S4 method for signature 'character,PFMatrix'
storeMatrix(x, pfmList)
## S4 method for signature 'SQLiteConnection,PFMatrix'
storeMatrix(x, pfmList)
## S4 method for signature 'JASPAR2014,PFMatrix'
storeMatrix(x, pfmList)
## S4 method for signature 'SQLiteConnection'
initializeJASPARDB(x, version=c("2014", "2016", "2018", "2020", "2022"))
## S4 method for signature 'character'
initializeJASPARDB(x, version=c("2014", "2016", "2018", "2020", "2022"))
## S4 method for signature 'JASPAR2014'
initializeJASPARDB(x, version)
## S4 method for signature 'JASPAR2016'
initializeJASPARDB(x, version)
## S4 method for signature 'JASPAR2018'
initializeJASPARDB(x, version)
## S4 method for signature 'JASPAR2020'
initializeJASPARDB(x, version)
|
x |
A character vector of length 1 for the path of JASPAR SQLite file,
or a |
IDs |
JASPAR stable IDs. |
pfmList |
The PFMatrixList object, or pfm object. |
version |
Which version of JASPAR to create. So far, it supports 2014, 2016 and 2018. |
If the operation works, a "success" will be returned.
1 2 3 4 5 | initializeJASPARDB("jaspar.sqlite", version="2014")
data("MA0043")
storeMatrix("jaspar.sqlite", MA0043)
deleteMatrixHavingID("jaspar.sqlite","MA0043.1")
file.remove("jaspar.sqlite")
|
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