getEmissionProb: Get the emission distribution parameters.
In ge11232002/TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
This function accesses the emission distribution parameters of the TFFM.
Usage
1
getEmissionProb(tffm)
Arguments
tffm
A TFFMFirst object or a TFFMDetail object.
Details
This function accesses the emission distribution parameters for each position
of the TFFM.
It returns the probability of emitting certain nucleotide based on the
nucleotide on the previous site.
Value
A matrix of numeric with dimensions of 16 * ncol(tffm).
Author(s)
Ge Tan
See Also
Examples
1
2
3
4
5
6
7
8
9
xmlFirst <- file.path(system.file("extdata", package="TFBSTools"),
"tffm_first_order.xml")
tffmFirst <- readXMLTFFM(xmlFirst, type="First")
getEmissionProb(tffmFirst)
xmlDetail <- file.path(system.file("extdata", package="TFBSTools"),
"tffm_detailed.xml")
tffmDetail <- readXMLTFFM(xmlDetail, type="Detail")
getEmissionProb(tffmDetail)
ge11232002/TFBSTools documentation built on Sept. 12, 2021, 12:07 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
This function accesses the emission distribution parameters of the TFFM.
Usage
1 | getEmissionProb(tffm)
|
Arguments
tffm |
A |
Details
This function accesses the emission distribution parameters for each position of the TFFM. It returns the probability of emitting certain nucleotide based on the nucleotide on the previous site.
Value
A matrix of numeric with dimensions of 16 * ncol(tffm).
Author(s)
Ge Tan
See Also
Examples
1 2 3 4 5 6 7 8 9 | xmlFirst <- file.path(system.file("extdata", package="TFBSTools"),
"tffm_first_order.xml")
tffmFirst <- readXMLTFFM(xmlFirst, type="First")
getEmissionProb(tffmFirst)
xmlDetail <- file.path(system.file("extdata", package="TFBSTools"),
"tffm_detailed.xml")
tffmDetail <- readXMLTFFM(xmlDetail, type="Detail")
getEmissionProb(tffmDetail)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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