inst/app/model.R
In geanes/kidnapr: Purpose-built app for collecting data for future inclusion in KidStats.
## model.R ##
# Get table metadata
GetTableMetadata <- function() {
result <- list(
uid = c(label = "UID", value = "", type = "character"),
medrec = c(label = "Medical Record", value = "", type = "character"),
SEX = c(label = "Sex", value = "NA", type = "factor", levels = "F, M, NA", ordered = FALSE),
height_raw = c(label = "Height (raw)", value = NA, type = "character"),
height = c(label = "Height", value = NA, type = "numeric"),
weight_raw = c(label = "Weight (raw)", value = NA, type = "character"),
weight = c(label = "Weight", value = NA, type = "numeric"),
collector = c(label = "Collector", value = "", type = "character"),
location = c(label = "Location", value = "", type = "character"),
tstamp = c(label = "Timestamp", value = "", type = "character"),
# birth = c(label = "Birth Date", value = NULL, type = "character"),
birth = c(label = "Birth Date", value = as.character(Sys.Date()), type = "character"),
# image = c(label = "Image Date", value = NULL, type = "character"),
image = c(label = "Image Date", value = as.character(Sys.Date()), type = "character"),
aged = c(label = "Age (days)", value = NA, type = "integer"),
agey = c(label = "Age (years)", value = NA, type = "numeric"),
COD = c(label = "Cause of death", value = NA, type = "character"),
MOD = c(label = "Manner of death", value = NA, type = "chracter"),
## long bone measurements
# femur
FDL_L = c(label = "FDL_L", value = NA, type = "numeric"),
FMSB_L = c(label = "FMSB_L", value = NA, type = "numeric"),
FDB_L = c(label = "FDB_L", value = NA, type = "numeric"),
FCB_L = c(label = "FCB_L", value = NA, type = "numeric"),
FIB_L = c(label = "FIB_L", value = NA, type = "numeric"),
FDL_R = c(label = "FDL_R", value = NA, type = "numeric"),
FMSB_R = c(label = "FMSB_R", value = NA, type = "numeric"),
FDB_R = c(label = "FDB_R", value = NA, type = "numeric"),
FCB_R = c(label = "FCB_R", value = NA, type = "numeric"),
FIB_R = c(label = "FIB_R", value = NA, type = "numeric"),
# tibia
TDL_L = c(label = "TDL_L", value = NA, type = "numeric"),
TPB_L = c(label = "TPB_L", value = NA, type = "numeric"),
TMSB_L = c(label = "TMSB_L", value = NA, type = "numeric"),
TDB_L = c(label = "TDB_L", value = NA, type = "numeric"),
TDL_R = c(label = "TDL_R", value = NA, type = "numeric"),
TPB_R = c(label = "TPB_R", value = NA, type = "numeric"),
TMSB_R = c(label = "TMSB_R", value = NA, type = "numeric"),
TDB_R = c(label = "TDB_R", value = NA, type = "numeric"),
# fibula
FBDL_L = c(label = "FBDL_L", value = NA, type = "numeric"),
FBDL_R = c(label = "FBDL_R", value = NA, type = "numeric"),
# humerus
HDL_L = c(label = "HDL_L", value = NA, type = "numeric"),
HPB_L = c(label = "HPB_L", value = NA, type = "numeric"),
HMSB_L = c(label = "HMSB_L", value = NA, type = "numeric"),
HDB_L = c(label = "HDB_L", value = NA, type = "numeric"),
HCB_L = c(label = "HCB_L", value = NA, type = "numeric"),
HIB_L = c(label = "HIB_L", value = NA, type = "numeric"),
HDL_R = c(label = "HDL_R", value = NA, type = "numeric"),
HPB_R = c(label = "HPB_R", value = NA, type = "numeric"),
HMSB_R = c(label = "HMSB_R", value = NA, type = "numeric"),
HDB_R = c(label = "HDB_R", value = NA, type = "numeric"),
HCB_R = c(label = "HCB_R", value = NA, type = "numeric"),
HIB_R = c(label = "HIB_R", value = NA, type = "numeric"),
# radius
RDL_L = c(label = "RDL_L", value = NA, type = "numeric"),
RPB_L = c(label = "RPB_L", value = NA, type = "numeric"),
RMSB_L = c(label = "RMSB_L", value = NA, type = "numeric"),
RDB_L = c(label = "RDB_L", value = NA, type = "numeric"),
RDL_R = c(label = "RDL_R", value = NA, type = "numeric"),
RPB_R = c(label = "RPB_R", value = NA, type = "numeric"),
RMSB_R = c(label = "RMSB_R", value = NA, type = "numeric"),
RDB_R = c(label = "RDB_R", value = NA, type = "numeric"),
# ulna
UDL_L = c(label = "UDL_L", value = NA, type = "numeric"),
UMSB_L = c(label = "UMSB_L", value = NA, type = "numeric"),
UDL_R = c(label = "UDL_R", value = NA, type = "numeric"),
UMSB_R = c(label = "UMSB_R", value = NA, type = "numeric"),
# pelvis
PIH_L = c(label = "PIH_L", value = NA, type = "numeric"),
PIB_L = c(label = "PIB_L", value = NA, type = "numeric"),
PIH_R = c(label = "PIH_R", value = NA, type = "numeric"),
PIB_R = c(label = "PIB_R", value = NA, type = "numeric"),
## dentition
# dentition maxillary
max_M1_L = c(label = "max_M1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_M1_R = c(label = "max_M1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_M1_side = c(label = "max_M1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_M2_L = c(label = "max_M2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_M2_R = c(label = "max_M2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_M2_side = c(label = "max_M2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_M3_L = c(label = "max_M3_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_M3_R = c(label = "max_M3_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_M3_side = c(label = "max_M3_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_PM1_L = c(label = "max_PM1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_PM1_R = c(label = "max_PM1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_PM1_side = c(label = "max_PM1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_PM2_L = c(label = "max_PM2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_PM2_R = c(label = "max_PM2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_PM2_side = c(label = "max_PM2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_C_L = c(label = "max_C_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_C_R = c(label = "max_C_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_C_side = c(label = "max_C_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_I1_L = c(label = "max_I1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_I1_R = c(label = "max_I1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_I1_side = c(label = "max_I1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_I2_L = c(label = "max_I2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_I2_R = c(label = "max_I2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_I2_side = c(label = "max_I2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
# dentition mandibular
man_M1_L = c(label = "man_M1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_M1_R = c(label = "man_M1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_M1_side = c(label = "man_M1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_M2_L = c(label = "man_M2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_M2_R = c(label = "man_M2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_M2_side = c(label = "man_M2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_M3_L = c(label = "man_M3_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_M3_R = c(label = "man_M3_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_M3_side = c(label = "man_M3_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_PM1_L = c(label = "man_PM1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_PM1_R = c(label = "man_PM1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_PM1_side = c(label = "man_PM1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_PM2_L = c(label = "man_PM2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_PM2_R = c(label = "man_PM2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_PM2_side = c(label = "man_PM2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_C_L = c(label = "man_C_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_C_R = c(label = "man_C_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_C_side = c(label = "man_C_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_I1_L = c(label = "man_I1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_I1_R = c(label = "man_I1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_I1_side = c(label = "man_I1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_I2_L = c(label = "man_I2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_I2_R = c(label = "man_I2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_I2_side = c(label = "man_I2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
# epiphyseal fusion and ossification
# femur
FH_EF_L = c(label = "FH_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FGT_EF_L = c(label = "FGT_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FLT_EF_L = c(label = "FLT_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FDE_EF_L = c(label = "FDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FH_EF_R = c(label = "FH_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FGT_EF_R = c(label = "FGT_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FLT_EF_R = c(label = "FLT_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FDE_EF_R = c(label = "FDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# tibia
TPE_EF_L = c(label = "TPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
TDE_EF_L = c(label = "TDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
TPE_EF_R = c(label = "TPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
TDE_EF_R = c(label = "TDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# fibula
FBPE_EF_L = c(label = "FBPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FBDE_EF_L = c(label = "FBDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FBPE_EF_R = c(label = "FBPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FBDE_EF_R = c(label = "FBDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# humerus
HH_Oss_L = c(label = "HH_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HGT_Oss_L = c(label = "HGT_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLT_Oss_L = c(label = "HLT_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HPE_EF_L = c(label = "HPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HC_Oss_L = c(label = "HC_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HT_Oss_L = c(label = "HT_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLE_Oss_L = c(label = "HLE_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE1_EF_L = c(label = "HCE1_EF_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE2_EF_L = c(label = "HCE2_EF_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HDE_EF_L = c(label = "HDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HME_EF_L = c(label = "HME_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HH_Oss_R = c(label = "HH_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HGT_Oss_R = c(label = "HGT_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLT_Oss_R = c(label = "HLT_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HPE_EF_R = c(label = "HPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HC_Oss_R = c(label = "HC_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HT_Oss_R = c(label = "HT_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLE_Oss_R = c(label = "HLE_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE1_EF_R = c(label = "HCE1_EF_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE2_EF_R = c(label = "HCE2_EF_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HDE_EF_R = c(label = "HDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HME_EF_R = c(label = "HME_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# radius
RPE_EF_L = c(label = "RPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
RDE_EF_L = c(label = "RDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
RPE_EF_R = c(label = "RPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
RDE_EF_R = c(label = "RDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# ulna
UPE_EF_L = c(label = "UPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
UDE_EF_L = c(label = "UDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
UPE_EF_R = c(label = "UPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
UDE_EF_R = c(label = "UDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# other
CT_EF_L = c(label = "CT_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
CT_EF_R = c(label = "CT_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
CC_Oss = c(label = "CC_Oss", value = "", type = "factor", levels = paste(c(0:8), collapse = ", "), ordered = TRUE),
TC_Oss = c(label = "TC_Oss", value = "", type = "factor", levels = paste(c(0:7), collapse = ", "), ordered = TRUE),
ISPR_EF_L = c(label = "ISPR_EF_L", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
ISPR_EF_R = c(label = "ISPR_EF_R", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
ILIS_EF_L = c(label = "ILIS_EF_L", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
ILIS_EF_R = c(label = "ILIS_EF_R", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
PC_Oss_L = c(label = "PC_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
PC_Oss_R = c(label = "PC_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE)
)
return(result)
}
geanes/kidnapr documentation built on May 17, 2019, 12:15 a.m.
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## model.R ##
# Get table metadata
GetTableMetadata <- function() {
result <- list(
uid = c(label = "UID", value = "", type = "character"),
medrec = c(label = "Medical Record", value = "", type = "character"),
SEX = c(label = "Sex", value = "NA", type = "factor", levels = "F, M, NA", ordered = FALSE),
height_raw = c(label = "Height (raw)", value = NA, type = "character"),
height = c(label = "Height", value = NA, type = "numeric"),
weight_raw = c(label = "Weight (raw)", value = NA, type = "character"),
weight = c(label = "Weight", value = NA, type = "numeric"),
collector = c(label = "Collector", value = "", type = "character"),
location = c(label = "Location", value = "", type = "character"),
tstamp = c(label = "Timestamp", value = "", type = "character"),
# birth = c(label = "Birth Date", value = NULL, type = "character"),
birth = c(label = "Birth Date", value = as.character(Sys.Date()), type = "character"),
# image = c(label = "Image Date", value = NULL, type = "character"),
image = c(label = "Image Date", value = as.character(Sys.Date()), type = "character"),
aged = c(label = "Age (days)", value = NA, type = "integer"),
agey = c(label = "Age (years)", value = NA, type = "numeric"),
COD = c(label = "Cause of death", value = NA, type = "character"),
MOD = c(label = "Manner of death", value = NA, type = "chracter"),
## long bone measurements
# femur
FDL_L = c(label = "FDL_L", value = NA, type = "numeric"),
FMSB_L = c(label = "FMSB_L", value = NA, type = "numeric"),
FDB_L = c(label = "FDB_L", value = NA, type = "numeric"),
FCB_L = c(label = "FCB_L", value = NA, type = "numeric"),
FIB_L = c(label = "FIB_L", value = NA, type = "numeric"),
FDL_R = c(label = "FDL_R", value = NA, type = "numeric"),
FMSB_R = c(label = "FMSB_R", value = NA, type = "numeric"),
FDB_R = c(label = "FDB_R", value = NA, type = "numeric"),
FCB_R = c(label = "FCB_R", value = NA, type = "numeric"),
FIB_R = c(label = "FIB_R", value = NA, type = "numeric"),
# tibia
TDL_L = c(label = "TDL_L", value = NA, type = "numeric"),
TPB_L = c(label = "TPB_L", value = NA, type = "numeric"),
TMSB_L = c(label = "TMSB_L", value = NA, type = "numeric"),
TDB_L = c(label = "TDB_L", value = NA, type = "numeric"),
TDL_R = c(label = "TDL_R", value = NA, type = "numeric"),
TPB_R = c(label = "TPB_R", value = NA, type = "numeric"),
TMSB_R = c(label = "TMSB_R", value = NA, type = "numeric"),
TDB_R = c(label = "TDB_R", value = NA, type = "numeric"),
# fibula
FBDL_L = c(label = "FBDL_L", value = NA, type = "numeric"),
FBDL_R = c(label = "FBDL_R", value = NA, type = "numeric"),
# humerus
HDL_L = c(label = "HDL_L", value = NA, type = "numeric"),
HPB_L = c(label = "HPB_L", value = NA, type = "numeric"),
HMSB_L = c(label = "HMSB_L", value = NA, type = "numeric"),
HDB_L = c(label = "HDB_L", value = NA, type = "numeric"),
HCB_L = c(label = "HCB_L", value = NA, type = "numeric"),
HIB_L = c(label = "HIB_L", value = NA, type = "numeric"),
HDL_R = c(label = "HDL_R", value = NA, type = "numeric"),
HPB_R = c(label = "HPB_R", value = NA, type = "numeric"),
HMSB_R = c(label = "HMSB_R", value = NA, type = "numeric"),
HDB_R = c(label = "HDB_R", value = NA, type = "numeric"),
HCB_R = c(label = "HCB_R", value = NA, type = "numeric"),
HIB_R = c(label = "HIB_R", value = NA, type = "numeric"),
# radius
RDL_L = c(label = "RDL_L", value = NA, type = "numeric"),
RPB_L = c(label = "RPB_L", value = NA, type = "numeric"),
RMSB_L = c(label = "RMSB_L", value = NA, type = "numeric"),
RDB_L = c(label = "RDB_L", value = NA, type = "numeric"),
RDL_R = c(label = "RDL_R", value = NA, type = "numeric"),
RPB_R = c(label = "RPB_R", value = NA, type = "numeric"),
RMSB_R = c(label = "RMSB_R", value = NA, type = "numeric"),
RDB_R = c(label = "RDB_R", value = NA, type = "numeric"),
# ulna
UDL_L = c(label = "UDL_L", value = NA, type = "numeric"),
UMSB_L = c(label = "UMSB_L", value = NA, type = "numeric"),
UDL_R = c(label = "UDL_R", value = NA, type = "numeric"),
UMSB_R = c(label = "UMSB_R", value = NA, type = "numeric"),
# pelvis
PIH_L = c(label = "PIH_L", value = NA, type = "numeric"),
PIB_L = c(label = "PIB_L", value = NA, type = "numeric"),
PIH_R = c(label = "PIH_R", value = NA, type = "numeric"),
PIB_R = c(label = "PIB_R", value = NA, type = "numeric"),
## dentition
# dentition maxillary
max_M1_L = c(label = "max_M1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_M1_R = c(label = "max_M1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_M1_side = c(label = "max_M1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_M2_L = c(label = "max_M2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_M2_R = c(label = "max_M2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_M2_side = c(label = "max_M2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_M3_L = c(label = "max_M3_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_M3_R = c(label = "max_M3_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_M3_side = c(label = "max_M3_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_PM1_L = c(label = "max_PM1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_PM1_R = c(label = "max_PM1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_PM1_side = c(label = "max_PM1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_PM2_L = c(label = "max_PM2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_PM2_R = c(label = "max_PM2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_PM2_side = c(label = "max_PM2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_C_L = c(label = "max_C_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_C_R = c(label = "max_C_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_C_side = c(label = "max_C_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_I1_L = c(label = "max_I1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_I1_R = c(label = "max_I1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_I1_side = c(label = "max_I1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
max_I2_L = c(label = "max_I2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
max_I2_R = c(label = "max_I2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# max_I2_side = c(label = "max_I2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
# dentition mandibular
man_M1_L = c(label = "man_M1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_M1_R = c(label = "man_M1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_M1_side = c(label = "man_M1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_M2_L = c(label = "man_M2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_M2_R = c(label = "man_M2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_M2_side = c(label = "man_M2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_M3_L = c(label = "man_M3_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_M3_R = c(label = "man_M3_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_M3_side = c(label = "man_M3_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_PM1_L = c(label = "man_PM1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_PM1_R = c(label = "man_PM1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_PM1_side = c(label = "man_PM1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_PM2_L = c(label = "man_PM2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_PM2_R = c(label = "man_PM2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_PM2_side = c(label = "man_PM2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_C_L = c(label = "man_C_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_C_R = c(label = "man_C_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_C_side = c(label = "man_C_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_I1_L = c(label = "man_I1_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_I1_R = c(label = "man_I1_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_I1_side = c(label = "man_I1_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
man_I2_L = c(label = "man_I2_L", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
man_I2_R = c(label = "man_I2_R", value = "", type = "factor", levels = paste(-1:13, collapse = ", "), ordered = TRUE),
# man_I2_side = c(label = "man_I2_side", value = "", type = "factor", levels = paste(c("M", "L", "R"), collapse = ", "), ordered = FALSE),
# epiphyseal fusion and ossification
# femur
FH_EF_L = c(label = "FH_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FGT_EF_L = c(label = "FGT_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FLT_EF_L = c(label = "FLT_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FDE_EF_L = c(label = "FDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FH_EF_R = c(label = "FH_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FGT_EF_R = c(label = "FGT_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FLT_EF_R = c(label = "FLT_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FDE_EF_R = c(label = "FDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# tibia
TPE_EF_L = c(label = "TPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
TDE_EF_L = c(label = "TDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
TPE_EF_R = c(label = "TPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
TDE_EF_R = c(label = "TDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# fibula
FBPE_EF_L = c(label = "FBPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FBDE_EF_L = c(label = "FBDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FBPE_EF_R = c(label = "FBPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
FBDE_EF_R = c(label = "FBDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# humerus
HH_Oss_L = c(label = "HH_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HGT_Oss_L = c(label = "HGT_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLT_Oss_L = c(label = "HLT_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HPE_EF_L = c(label = "HPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HC_Oss_L = c(label = "HC_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HT_Oss_L = c(label = "HT_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLE_Oss_L = c(label = "HLE_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE1_EF_L = c(label = "HCE1_EF_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE2_EF_L = c(label = "HCE2_EF_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HDE_EF_L = c(label = "HDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HME_EF_L = c(label = "HME_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HH_Oss_R = c(label = "HH_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HGT_Oss_R = c(label = "HGT_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLT_Oss_R = c(label = "HLT_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HPE_EF_R = c(label = "HPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HC_Oss_R = c(label = "HC_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HT_Oss_R = c(label = "HT_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HLE_Oss_R = c(label = "HLE_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE1_EF_R = c(label = "HCE1_EF_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HCE2_EF_R = c(label = "HCE2_EF_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
HDE_EF_R = c(label = "HDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
HME_EF_R = c(label = "HME_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# radius
RPE_EF_L = c(label = "RPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
RDE_EF_L = c(label = "RDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
RPE_EF_R = c(label = "RPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
RDE_EF_R = c(label = "RDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# ulna
UPE_EF_L = c(label = "UPE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
UDE_EF_L = c(label = "UDE_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
UPE_EF_R = c(label = "UPE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
UDE_EF_R = c(label = "UDE_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
# other
CT_EF_L = c(label = "CT_EF_L", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
CT_EF_R = c(label = "CT_EF_R", value = "", type = "factor", levels = paste(c(0, 1, 12, 2, 23, 3:4), collapse = ", "), ordered = TRUE),
CC_Oss = c(label = "CC_Oss", value = "", type = "factor", levels = paste(c(0:8), collapse = ", "), ordered = TRUE),
TC_Oss = c(label = "TC_Oss", value = "", type = "factor", levels = paste(c(0:7), collapse = ", "), ordered = TRUE),
ISPR_EF_L = c(label = "ISPR_EF_L", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
ISPR_EF_R = c(label = "ISPR_EF_R", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
ILIS_EF_L = c(label = "ILIS_EF_L", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
ILIS_EF_R = c(label = "ILIS_EF_R", value = "", type = "factor", levels = paste(c(0:2), collapse = ", "), ordered = TRUE),
PC_Oss_L = c(label = "PC_Oss_L", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE),
PC_Oss_R = c(label = "PC_Oss_R", value = "", type = "factor", levels = paste(c(0:1), collapse = ", "), ordered = TRUE)
)
return(result)
}
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