geneMatchR: Generic geneMatchR function

In genesofeve/projectR: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Generic geneMatchR function

Description

Matches genes accross datasets

Usage

geneMatchR(
  data1,
  data2,
  data1Names = NULL,
  data2Names = NULL,
  merge = FALSE,
  ...
)

Arguments

data1	a data matrix, typically genes by samples
data2	an amplitude matrix, typically genes by factors
data1Names	rownames of data matrix, for eg genenames
data2Names	rownames of amplitude matrix to be matched to rownames of datamatrix
merge	logical indicating wether or not to merged data sets
...	Additional arguments to geneMatchR

Value

A list of genes (intersection) in both datasets. (if merge = TRUE, Also returns merged data.)

Examples

geneMatchR(data1=p.ESepiGen4c1l$mRNA.Seq,data2=p.RNAseq6l3c3t,
data1Names=map.ESepiGen4c1l[["GeneSymbols"]])

genesofeve/projectR documentation built on Nov. 16, 2024, 8:20 p.m.