multivariateAnalysisR: Generic multivariateAnalysisR function

In genesofeve/projectR: Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

Generic multivariateAnalysisR function

Description

Performs multivariate analysis across specified clusters in datasets

Usage

multivariateAnalysisR(
  significanceLevel = 0.05,
  patternKeys,
  seuratobj,
  dictionaries,
  customNames = NULL,
  exclusive = TRUE,
  exportFolder = "",
  ANOVAwidth = 1000,
  ANOVAheight = 1000,
  CIwidth = 1000,
  CIheight = 1000,
  CIspacing = 1
)

Arguments

significanceLevel	double value for testing significance in ANOVA test
patternKeys	list of strings indicating pattern subsets from seuratobj to be analyzed
seuratobj	Seurat Object Data containing patternKeys in meta.data
dictionaries	list of dictionaries indicating clusters to be compared
customNames	list of custom names for clusters in corresponding order
exclusive	boolean value for determining interpolation between params in clusters
exportFolder	name of folder to store exported graphs and CSV files
ANOVAwidth	width of ANOVA png
ANOVAheight	height of ANOVA png
CIwidth	width of CI png
CIheight	height of CI png
CIspacing	spacing between each CI in CI graph

Value

a sorted list of ANOVA and CI results; ANOVA and Confidence Intervals are visualized and exported in both PNG and CSV

genesofeve/projectR documentation built on Nov. 16, 2024, 8:20 p.m.