create_tiles_max_gap: Create regions for testing methylation difference

In geneticsMiNIng/metR: Tools for Identification and Visualisation of Differentially Methylated Regions

Description

The same regions are observations that maximum difference position is gaps.length argument

Usage

create_tiles_max_gap(data, gaps.length)

Arguments

data	dataframe with specific columns: chr, poz, prob, no, meth, unmeth, meth.rate. This dataframe is result of function preprocessing.
gaps.length	integer number that specifies maximum difference position between the same methylation regions

Value

data.frame from parameter data with extra column tiles that is region id number within chromosomes

Examples

data('schizophrenia')
control <- schizophrenia %>% filter(category == 'control') %>%
dplyr::select(-category)

disease <- schizophrenia %>% filter(category == 'disease') %>%
 dplyr::select(-category)

data <- preprocessing(control, disease)
head(create_tiles_max_gap(data, gaps.length = 100))

geneticsMiNIng/metR documentation built on May 28, 2019, 8:41 p.m.