schizophrenia: Methylation data in chromosome 1.

In geneticsMiNIng/metR: Tools for Identification and Visualisation of Differentially Methylated Regions

Description

A dataset containing the methylation data in chromosome 1. Data for this probe are downloaded from site: http://www.neuroepigenomics.org/methylomedb/download.html. We used 4 control samples: Control1 AC, Control2 AC, Control3 AC and Control4 AC and 4 disease samples: SCZ1 AC, SCZ2 AC, SCZ3 AC, SCZ4 AC. After downloading we summed all results on the same position and chromosome separately from control and disease samples. The variables are as follows:

Usage

data(schizophrenia)

Format

A data frame with 4 116 194 rows and 7 variables

Details

• chr. name of chromosome where methylation data was collected (only chromosome 1.)

• poz. position of chromosome where methylation data was collected

• no. number of reads per position

• meth. number of reads with methylated cytosine

• unmeth. number of reads with unmethylated cytosine

• meth.rate. methylation.rate that is ratio meth./(meth. + unmeth.)

• category indicates if data are from control samples ('control' value) or from disease samples ('disease' value)

geneticsMiNIng/metR documentation built on May 28, 2019, 8:41 p.m.