Man pages for gerbeldo/rcell2
CellID Data Analysis Inside the Tidyverse
| all.unique | Test whether all elements in a vector are unique |
| annotation_magick | Funcion copada para mostrar fotos basada en magick |
| append_hues | Append Hu moments columns to data on a cell_data object |
| append_hues2 | Add Hu moments data.frame to a cell_data object |
| applyFilter | Add TRUTH column to cdata |
| arguments | Obtener argumentos para CellID |
| bind_filters | Bind shinyCell polygon filters by variable pairs |
| calculate_extra_morpho_vars | calculate_extra_morpho_vars |
| cargar.out_all | Una función para leer y combinar todos los archivos "out". |
| cell2 | Function to run CellID |
| cellArgs2 | Obtener argumentos para CellID |
| cellArgs2.summary | cellArgs2 Summaries |
| cellGif | cellMagick configured for prodicing a ucid's gif |
| cellid | Correr Cell-ID desde R usando .C() |
| cell.load.alt | Cargar el output de cell-id |
| cell.load.boundaries | Load cellid boundary data to a dataframe |
| cellMagick | magickCell alias |
| cellSpread | 2D binning of data and tiling of cell pictures |
| cellSpreadPlot | Plot for 2D binning of data and tiling of cell pictures |
| cellStrip | cellMagick configured for prodicing a ucid's strip |
| cellStrips | Wraps cellMagick to make strips, optionally cutting them. |
| check_tiff_mask | Make plots to examine correspondence between mean mask... |
| check_tiff_mask2 | Make plots to examine correspondence between mean mask... |
| cimage | cimage |
| cimage.cell.data | cimage.cell.data |
| cimage.cell.image | cimage.cell.image |
| cluster_test | Cluster test |
| d | d |
| dot-format.sequence | Format sequence of numbers |
| dot-mk_flag_table | Make Flag Table |
| dot-parse_load_vars | Parse Names of Variables to Load |
| getCellGeom | Geometria para agarrar un cuadradito de una imagen con magick... |
| get_cell_image | Title |
| get_cell_image.cell.data | get_cell_image |
| get_cell_image.data.frame | get_cell_image.data.frame |
| getFacetVars | Una función para procesar el facet string y que devuelva las... |
| get_fit_vars | get_fit_vars |
| getPositions | Get a list of numbers from the "position" input string |
| get_workflow_template | A function to donwload the latest worflow tempalte in... |
| helloWorld | Say hi! |
| hexPlotDf | Funcion para armar un dataframe para hacer plots tipo HEX |
| hover_closest | Find cell closest to hover point in shiny |
| hues_from_tsv2 | Generate Hu moments from XY coordinates TSV file |
| hues_from_tsv_files2 | Generate Hu moments data frame from one or more TSV files |
| hues_from_xy | Generate Hu moments from XY coordinates dataframe |
| hues_from_xy2 | Generate Hu moments from XY coordinates dataframe |
| hu.moments | Hu moments |
| is.cell.data | is cell data |
| kmeans_clustering | K-means clustering |
| load_cell_data | Load cellID data |
| magickCell | Funcion copada para mostrar fotos de Cell-ID basada en magick |
| magickForKnitr | Display an image in rmarkdown with knitr |
| magickPaths | Extaer paths para cellMagick del objeto cell.data |
| myhexbin | Función hexbin Esencialmente hexbin() pero un poco más a mi... |
| numbers_to_intervals | convert sequence of numbers to ranges |
| parameters.default | Default parameters list for Cell-ID |
| parameters.write | Write parameters to a [temporary] file |
| pic_df_from_tiff | Generate a dataframe with boundary coordinates from mask tiff... |
| pip | Polygon filtering function using "sp" package |
| pipe | Pipe |
| plotApp | Filtrar cdata usando gráficos y dibujando regiones |
| plotAppServer | Shiny app server function for shinyCell Define server logic... |
| plotAppUI | Shiny app UI object for shinyCell |
| plot_bound_filters | Plot bound shinyCell polygon filters by variable pairs |
| plot_filters | Plot shinyCell polygon filters |
| polyFilterApply | Apply polygonal filters to cdata |
| polyFilterCell | Build filterDF from polygonDF and cdataDF |
| qc_execute | qc_execute |
| qc_filter | qc_filter |
| qc_reset | qc_reset |
| qc_undo | qc_undo |
| rangeExpand | rangeExpand |
| rcell2 | Yeast Cell Cytometry Suite for CellID in R. |
| read_coords_tsv | Read TSV file with mask coords |
| read_tiff_masks | Read cell masks from BF.out |
| read_tiff_tags | Read TIFF tag information. |
| read_tsv.con.pos | Una función que lea un .csv y les agregue una columna con un... |
| shinyAppServer | Shiny app server function for shinyCell Define server logic... |
| shinyAppUI | Shiny app UI object for shinyCell |
| shinyCell | Filtrar cdata usando gráficos y dibujando regiones |
| smooth.spline.poly | whuber's spline.poly adapted to stats::smooth.spline |
| spline.poly | Splining a polygon with 'stats::spline' |
| square | Return brush vertices |
| square_tile | Armar mosaicos cuadrados a partir de un vector de imagenes en... |
| standardise_data | standardise_data |
| standardize_data | standardize_data |
| tagCell | Filtrar cdata usando gráficos y dibujando regiones |
| tagCellServer | Shiny app server function for tagCell Define server logic... |
| tagCellUi | Shiny app UI object for tagCell |
| tsv_paths_from_args | Generate data.frame with paths to coordinate TSV files |
| updateList | Update a list's value using another list, by common names. |
| write.delim | write tab delimited file |
