hues_from_tsv2: Generate Hu moments from XY coordinates TSV file

In gerbeldo/rcell2: CellID Data Analysis Inside the Tidyverse

Generate Hu moments from XY coordinates TSV file

Description

Cells in the dataframe are split by cellID, t.frame, flag, and pixtype by default.

Usage

hues_from_tsv2(
  masks_tsv_path,
  .parallel = F,
  shape_pixtype = "b",
  shape_flagtype = 0,
  cdata_subset = NULL,
  position = NULL
)

Arguments

masks_tsv_path	A path to the TSV file holding XY coordinates, from CellID's output with "-t" option.
.parallel	Enable cell-wise parallelization using parallel::parLapply
shape_pixtype	Default "b" for Hu moments based on boundary points. A character vector containing any of c("b", "i").
shape_flagtype	Default 0 for Hu moments based on flag value 0. Can be any of the integer flag values present in the out_bf_fl_mapping CellID files.
cdata_subset	Subset of cdata with unique rows, and only pos, t.frame and cellID columns.
position	Microscope position number (int) that corresponds to current TSV file, used for filtering if cdata_subset is not NULL.

Details

Optional filtering by shape type (boundary or interior) and CellID flag number.

Optional cell-wise parallelization.

gerbeldo/rcell2 documentation built on Aug. 15, 2022, 7:20 a.m.