cellStrips: Wraps cellMagick to make strips, optionally cutting them.

In gerbeldo/rcell2: CellID Data Analysis Inside the Tidyverse

Wraps cellMagick to make strips, optionally cutting them.

Description

'cdata' is split by 'split_col' and then images are generated.

Usage

cellStrips(
  cdata,
  paths,
  n_ucids = NULL,
  cut_breaks = 1,
  split_col = "ucid",
  ch = c("BF.out", "YFP.out"),
  sortVar = "t.frame",
  ...
)

Arguments

cdata	A Rcell data.frame (not the object).
paths	A paths dataframe with file path, t.frame, position and channel information of each picture.
n_ucids	will select the first 'n_ucids'
...	Arguments passed on to magickCell.
cut_strips	Use 'cut' to split the image series.

Details

'images' are split with 'cut', useful wen strips are too long.

gerbeldo/rcell2 documentation built on Aug. 15, 2022, 7:20 a.m.