cimage.cell.data: cimage.cell.data

In gerbeldo/rcell2: CellID Data Analysis Inside the Tidyverse

cimage.cell.data

Description

calls cimage.cell.image

Usage

## S3 method for class 'cell.data'
cimage(
  X,
  formula = NULL,
  facets = NULL,
  qc.filter = TRUE,
  time.var = c("*time*", "t.frame", "z.scan", "z.slice"),
  time.course = NULL,
  select = NULL,
  exclude = NULL,
  normalize.group = "channel",
  invert.lut = FALSE,
  N = NULL,
  ...
)

Arguments

X	cell.data or cell.image object to plot
formula	formula of the form 'var1+var2~var3' specifying how the images are to be ordered. See details.
facets	formula of the form 'var1+var2~var3' specifying how to facet the plot. See details.
qc.filter	a boolean value indicating if the quality control filter should be applied over the data
time.var	variables that indicate time and should be excluded from the grouping variables. See get_cell_image
time.course	boolean indicating if the image layout represents a time course and several images of the same cell at different times are expected
select	character vector defining further variables that are required for the plot
exclude	character vector defining variable names to be excluded
normalize.group	variable names that define groups of images that should be normalized together
invert.lut	boolean indicating if Look Up Table should be inverted
N	Number of random cells to select from each group. If NA or 'all', all cells are selected.
...	further arguments for methods. cimage calls get_cell_image, so all the arguments of this function are available.

gerbeldo/rcell2 documentation built on Aug. 15, 2022, 7:20 a.m.