cell.load.boundaries: Load cellid boundary data to a dataframe

In gerbeldo/rcell2: CellID Data Analysis Inside the Tidyverse

Load cellid boundary data to a dataframe

Description

Using 'data_source = "out.tif"' will give **un**ordered boundary pixels.

Usage

cell.load.boundaries(
  data.source,
  ...,
  arguments = NULL,
  pixel.type = "b",
  close.paths = FALSE,
  cell.data = NULL,
  tiff.channel = "BF.out"
)

Arguments

data.source	Either "out.tif" or "masks.tsv"
arguments	The arguments dataframe used to run cellid (prepared with rcell2::arguments).
pixel.type	When data.source = "masks.tsv", you may choose the pixel "type". At least one of c("i", "b") for interior and/or boundary pixels ("b" by default).
close.paths	When TRUE and data.source = "masks.tsv", append the first row to the end of the data.frame (groping by cellID and pos). Useful for plotting of making closed polygons.
cell.data	When data.source = "out.tif", provide the cell.data object (prepared with rcell2::cell.load.alt).
tiff.channel	When data.source = "out.tif", provide the channel name for images holding boundary data ('BF.out' by default).

Details

Using 'data_source = "masks.tsv"' will give ordered boundary pixels.

Value

A "cell.boundaries" data.frame.

gerbeldo/rcell2 documentation built on Aug. 15, 2022, 7:20 a.m.