AMARETTO_CreateRegulatorPrograms: AMARETTO_CreateRegulatorPrograms

Description Usage Arguments Value Examples

View source: R/amaretto_run.R

Description

AMARETTO_CreateRegulatorPrograms

Usage

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AMARETTO_CreateRegulatorPrograms(AMARETTOinit, AMARETTOresults)

Arguments

AMARETTOinit

List output from AMARETTO_Initialize().

AMARETTOresults

List output from AMARETTO_Run()

Value

result

Examples

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data('ProcessedDataLIHC')
## Not run: 
AMARETTOinit <- AMARETTO_Initialize(MA_matrix = ProcessedDataLIHC$MA_matrix,
                                    CNV_matrix = ProcessedDataLIHC$CNV_matrix,
                                    MET_matrix = ProcessedDataLIHC$MET_matrix,
                                    NrModules = 20, VarPercentage = 60)
AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

## End(Not run)
load(system.file('extdata','AMARETTOinit.rda',package = 'AMARETTO'))
load(system.file('extdata','AMARETTOresults.rda',package = 'AMARETTO'))
AMARETTO_RP <- AMARETTO_CreateRegulatorPrograms(AMARETTOinit,AMARETTOresults)

gevaertlab/AMARETTO documentation built on Feb. 19, 2019, 4:15 a.m.