AMARETTO_Run: AMARETTO_Run Function to run AMARETTO, a statistical...

In gevaertlab/AMARETTO: Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

AMARETTO_Run Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.

Description

AMARETTO_Run Function to run AMARETTO, a statistical algorithm to identify cancer drivers by integrating a variety of omics data from cancer and normal tissue.

Usage

AMARETTO_Run(AMARETTOinit)

Arguments

AMARETTOinit

List output from AMARETTO_Initialize().

Value

result

Examples

data('ProcessedDataLIHC')
AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
                                    NrModules = 2, VarPercentage = 50)
AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

gevaertlab/AMARETTO documentation built on April 6, 2023, 2:43 p.m.