AMARETTO_Preprocess: AMARETTO_Preprocess

In gevaertlab/AMARETTO: Regulatory Network Inference and Driver Gene Evaluation using Integrative Multi-Omics Analysis and Penalized Regression

AMARETTO_Preprocess

Description

Wrapper code that analyzes process TCGA GISTIC (CNV) and gene expression (rna-seq or microarray) data via one call

Usage

AMARETTO_Preprocess(DataSetDirectories = DataSetDirectories,
  BatchData = BatchData)

Arguments

DataSetDirectories	DataSetDirectories
BatchData	BatchData

Value

result

Examples

## Not run: 
TargetDirectory <-  "Downloads"  # path to data download directory
CancerSite <- 'CHOL'
DataSetDirectories <- AMARETTO_Download(CancerSite,TargetDirectory)
ProcessedData <- AMARETTO_Preprocess(DataSetDirectories,BatchData)

## End(Not run)

gevaertlab/AMARETTO documentation built on April 6, 2023, 2:43 p.m.