AMARETTO_Preprocess: AMARETTO_Preprocess

Description Usage Arguments Value Examples

View source: R/amaretto_preprocess.R

Description

Wrapper code that analyzes process TCGA GISTIC (CNV) and gene expression (rna-seq or microarray) data via one call

Usage

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AMARETTO_Preprocess(CancerSite, DataSetDirectories)

Arguments

CancerSite

CancerSite

DataSetDirectories

DataSetDirectories

Value

result

Examples

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## Not run: 
data('BatchData')
TargetDirectory <- file.path(getwd(),'Downloads/') # path to data download directory
CancerSite <- 'LIHC'
DataSetDirectories <- AMARETTO_Download(CancerSite,TargetDirectory)
ProcessedData <- AMARETTO_Preprocess(CancerSite,DataSetDirectories)

## End(Not run)

gevaertlab/AMARETTO documentation built on Feb. 19, 2019, 4:15 a.m.