AMARETTO_ExportResults: AMARETTO_ExportResults

View source: R/amaretto_download.R

AMARETTO_ExportResultsR Documentation

AMARETTO_ExportResults

Description

Retrieve a download of all the data linked with the run (including heatmaps)

Usage

AMARETTO_ExportResults(AMARETTOinit, AMARETTOresults, data_address,
  Heatmaps = TRUE, CNV_matrix = NULL, MET_matrix = NULL)

Arguments

AMARETTOinit

AMARETTO initialize output

AMARETTOresults

AMARETTO results output

data_address

Directory to save data folder

Heatmaps

Output heatmaps as pdf

CNV_matrix

CNV_matrix

MET_matrix

MET_matrix

Value

result

Examples

data('ProcessedDataLIHC')
TargetDirectory <- file.path(getwd(),"Downloads/");dir.create(TargetDirectory)
AMARETTOinit <- AMARETTO_Initialize(ProcessedData = ProcessedDataLIHC,
                                    NrModules = 2, VarPercentage = 50)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)
AMARETTO_ExportResults(AMARETTOinit,AMARETTOresults,TargetDirectory,Heatmaps = FALSE)

gevaertlab/AMARETTO documentation built on April 6, 2023, 2:43 p.m.