AMARETTO_ExportResults: AMARETTO_ExportResults

Description Usage Arguments Value Examples

View source: R/amaretto_download.R

Description

Retrieve a download of all the data linked with the run (including heatmaps)

Usage

1
2
AMARETTO_ExportResults(AMARETTOinit, AMARETTOresults, data_address,
  Heatmaps = TRUE, CNV_matrix = NULL, MET_matrix = NULL)

Arguments

AMARETTOinit

AMARETTO initialize output

AMARETTOresults

AMARETTO results output

data_address

Directory to save data folder

Heatmaps

Output heatmaps as pdf

CNV_matrix

CNV_matrix

MET_matrix

MET_matrix

Value

result

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
data('ProcessedDataLIHC')
## Not run: 
AMARETTOinit <- AMARETTO_Initialize(MA_matrix = ProcessedDataLIHC$MA_matrix,
                                    CNV_matrix = ProcessedDataLIHC$CNV_matrix,
                                    MET_matrix = ProcessedDataLIHC$MET_matrix,
                                    NrModules = 20, VarPercentage = 60)

AMARETTOresults <- AMARETTO_Run(AMARETTOinit)

## End(Not run)
load(system.file('extdata','AMARETTOinit.rda',package = 'AMARETTO'))
load(system.file('extdata','AMARETTOresults.rda',package = 'AMARETTO'))
AMARETTO_ExportResults(AMARETTOinit,AMARETTOresults,'./')

gevaertlab/AMARETTO documentation built on Feb. 19, 2019, 4:15 a.m.