Description Usage Arguments Examples
Calculates AAI (Average Amino acid Identity) values for all genomes present in the folder.
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pattern |
a pattern (like '.faa') for recognizing the genome files. |
reference |
is a genome name used to compare one vs. the rest. If set to 'all' (default), all vs. all is computed. |
path |
is the full path to where genome annotations in fasta format are placed. |
outdir |
a name for the output directory that will be created for results. |
proc |
is the number of threads for parallel computing. |
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