uprot: uprot

In giraola/taxxo: Integrating and automatising tools for prokaryotes taxonogenomics

Description

Identifies and extracts a set of 40 prokaryotic universal proteins used as phylogenetic markers.

Usage

uprot(pattern = ".faa", path = ".", outdir = "uprot_output", proc = 2)

Arguments

pattern	a pattern (like '.faa') for recognizing the annotation files.
path	is the full path to where genome annotations in fasta format are placed.
outdir	a name for the output directory that will be created for results.
proc	is the number of threads used for protein searches.

Examples

uprot(path='./prodigal_output',pattern='.faa',outdir='uprot_output',proc=2)

giraola/taxxo documentation built on May 17, 2019, 5:25 a.m.